124 lines
2.1 KiB
Text
124 lines
2.1 KiB
Text
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#
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# dgg added new readseq formats, 29 dec 92
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#
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item:Export Foreign Format
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itemmethod:readseq in1 -pipe -all -form=$FORMAT > $OUTPUTFILE
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itemhelp:readseq.help
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arg:FORMAT
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argtype:choice_menu
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argchoice:GenBank:genbank
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argchoice:IG/Stanford:ig
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argchoice:NBRF:nbrf
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argchoice:EMBL:embl
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argchoice:GCG:gcg
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argchoice:DNA Strider:strider
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argchoice:Fitch:fitch
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argchoice:Pearson/Fasta:pearson
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argchoice:Zuker:zuker
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argchoice:Olsen:olsen
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argchoice:Phylip:phylip
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#argchoice:Phylip v3.2:phylip3.2
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argchoice:Plain text:raw
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argchoice:ASN.1:asn
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argchoice:PIR:pir
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argchoice:MSF:msf
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argchoice:PAUP:paup
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argchoice:Pretty:pretty -nametop -nameleft=3 -numright -nameright -numtop
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arg:OUTPUTFILE
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argtype:text
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arglabel:Save as?
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in:in1
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informat:genbank
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#
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#dgg addition for new readseq, 24 dec 92
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#
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item:Pretty Print
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itemmethod:readseq in1 -p -a -f=pretty $NAMELEFT $NAMERIGHT $NUMTOP $NUMBOT $NUMLEFT $NUMRIGHT -col=$COLS -width=$WIDTH $MATCH $GAPC > in1.pretty; (textedit in1.pretty; /bin/rm -f in1 in1.pretty)&
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itemhelp:readseq.help
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#nametop is bad !?
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in:in1
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informat:genbank
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arg:NAMETOP
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argtype:chooser
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arglabel:Names at top ?
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argchoice:No:
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argchoice:Yes:-nametop
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arg:NAMELEFT
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argtype:chooser
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arglabel:Names at left ?
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argchoice:No:
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argchoice:Yes:-nameleft
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arg:NAMERIGHT
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argtype:chooser
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arglabel:Names at right?
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argchoice:Yes:-nameright
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argchoice:No:
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arg:NUMTOP
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argtype:chooser
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arglabel:Numbers at top ?
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argchoice:Yes:-numtop
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argchoice:No:
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arg:NUMBOT
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argtype:chooser
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arglabel:Numbers at tail ?
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argchoice:No:
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argchoice:Yes:-numbot
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arg:NUMLEFT
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argtype:chooser
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arglabel:Numbers at left ?
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argchoice:Yes:-numleft
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argchoice:No:
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arg:NUMRIGHT
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argtype:chooser
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arglabel:Numbers at right?
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argchoice:Yes:-numright
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argchoice:No:
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arg:MATCH
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argtype:chooser
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arglabel:Use match '.' for 2..n species?
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argchoice:No:
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argchoice:Yes:-match
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arg:GAPC
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argtype:chooser
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arglabel:Count gap symbols?
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argchoice:No:
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argchoice:Yes:-gap
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arg:WIDTH
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argtype:slider
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arglabel:Sequence width?
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argmin:10
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argmax:200
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argvalue:50
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arg:COLS
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argtype:slider
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arglabel:Column spacers?
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argmin:0
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argmax:50
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argvalue:10
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### pretty print insert end
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#
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