gde_linux/CORE/infile

192 lines
12 KiB
Plaintext
Executable File

10 916
contig GGGnnGGnGn GGnnnGnnGn nnnGGnnnnn nnnTnTGTnT GnnGGnAGGG
W22140 AAAAANGCCC NNTTCNAAGN GGGGGGGGGG GGGGGGGATA TTTTGCNNAG
R.C.W27436 GGGNNNNGNN NNNNNNNNNN NNNNNNAANN NNNNNNNNNN NNNNNNNNNN
R.C.W27652 GGNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
W28762 TCTTGACATT TGTCTCCATT TCAGCAAAAC GANACCTGTG GTGAAGGGAT
#10005_2 2 GGnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
R.C.W27652 GGNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
W28762 ---------- ---------- ---------- ---------- ----------
W28762(165 GGGNNGGNGN GGNNNGNNGN NNNGGNNNNN NNNTNTGTNT GNNGGNAGGG
#10005_2 2 GGGnnGGnGn GGnnnGnnGn nnnGGnnnnn nnnTnTGTnT GnnGGnAGGG
nnTnTnAnnn nnTTnTAnAG TnAAAGnTTG GTnnnnGTnn nTTTGAnGAA
GGGGGCATGA TGNNGAGANC NAAAGAAAGN NCNGGGNGGG AAAAAAGAAG
NNNANNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
TTGTGTGCTG GCACTG---- ---------- ---------- ----------
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
---------- ---------- ---------- ---------- ----------
NNTNTNANNN NNTTNTANAG TNAAAGNTTG GTNNNNGTNN NTTTGANGAA
nnTnTnAnnn nnTTnTAnAG TnAAAGnTTG GTnnnnGTnn nTTTGAnGAA
GnTCAAnnTG GGGnnnAnAn nnGnnnTTGA nTGAAAATGG GGnAAnCCCC
GAGGNCCCTG GNGGGAGGGG GGNNCGNNTT TNNTGCNCCG GATGGAGGGN
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
NNNNNNNNGN AANNNNNNNN NNNNNNNNNN NNNNNNNNNT TGAAAACTGT
---------- ---------- ---------- ---------- ----------
nnnnnnnnGn AAnnnnnnnn nnnnnnnnnn nnnnnnnnnT TGAAAACTGT
NNNNNNNNGN AANNNNNNNN NNNNNNNNNN NNNNNNNNNT TGAAAACTGT
---------- ---------- ---------- ---------- ----------
GNTCAANNTG GGGNNNANAN NNGNNNTTGA NTGAAAATGG GGNAANCCCC
GnTCAAnnTG GGGnnnAnAn nnGnnnTTGA nTGAAAATGG GGnAAnCCCC
CnTTTTnCCA GTCAnCTGGT AAGTCCAAGC TGAA-n--Tc TACT---CCG
GGGGNTTTTN AAGNNTGTTT NTTTANAAGN AAGAGGGGGA NAAAATTTTT
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
TANCCAANTG GAATCCTAAG ACAATTTTCT TCCAANCCAC CCAACCGAAA
---------- ---------- ---------- ---------- ----------
TAnCCAAnTG GAATCCTAAG ACAATTTTCT -cCAwTTCA- sCAAC-CGAA
TANCCAANTG GAATCCTAAG ACAATTTTCT TCCAANCCAC CCAAC-CGAA
---------- ---------- ---------- ---------- ----------
CNTTTTNCCA GTCANCTGGT AAGTCCAAGC TGAA-N--TC TACTC--C-G
CnTTTTnCCA GTCAnCTGGT AAGTCCAAGC Tgaa----Tc TACTC--C-G
CATGTAA-CC C-AAAAGAGm TGTCCAGAGC CAAGGCTTCT ACCTTCATTG
TTNNTTCTNT NNCTNGNNNG GGGGGGGGGG GGGGCCCCCA ATAAGNNNTT
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
CCCTGTGGTG GAGGGAATTN CGTTCTTGGC NCTTCAGACT NCAGGGCAGG
---------- ---------- ---------- ----CAGACT GCAGGGNAGG
ACCCTGTGGT GrAGGGATTT GTGTGCT-GG CACTGCAGAC TGCAGGGCAG
ACCCTGTGGT GGAGGGAATT NCGTTCTTGG CNCTTCAGAC TNCAGGGCAG
---------- ---------- ---------- ---------- ----------
CATGTAACCC C-NAAAGAGT TGTCCAGAGC CAAGGCTTCT ACCTTCATTG
CATGTAa-CC C-AAAAGAGm TGTCCAGAGC CAAGGCTTCT ACCTTCATTG
TCCCTCTCTG TGCTCAAGGA GTTCCATTCC AGGAGGAAGA GATCTATACC
GNGCNCAGAA NNAGGGGGGG GNGGGGGGGC CCCTTTNCTC CNAAAAATTT
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
AA-------- ---------- ---------- ---------- ----------
AA-------- ---------- ---------- ---------- ----------
GAAAGGGCTA GGGCCCAGGG GCTGGGAmAT GCATGAGGT- gCTCGGAGGA
GAAAGGGCTA GGGCCCAGGG GCTGGGAAAT GCATGAGGTT GCTCGGAGGA
---------- ---------- ---------- ---------- ----------
TCCCTCTCTG TGCTCAAGGA GTTCCATTCC AGGAGGAAGA GATCTATACC
TCCCTCTCTG TGCTCAAGGA GTTCCATTCC AGGAGGAAGA GATCTATACC
CTaAGCAGAT AGCAAAGaAG ATaATGGAGG AgCAATTGGT CATGGCCtTG
CCCCCCNTTT TGGGNAAGGG TGGGGGAAAN NNTTTGGGCA AANAGGGGAA
NNNNNNNNNN NNNAANNAGG GCTAGGGCCC AGGGGCTGGG ACATGCATGA
---------- -------AGG GCTAGGGCCC AGGGGCTGGG AAATGCATGA
---------- -------AGG GCTAGGGCCC AGGGGCTGGG ACATGCATGA
GCCTGGCTAA ATCCAAGCAC CAGCACCTGT GAGTCTGCTC TCTTCTCAGC
GCCTGGCTAA ATCCAAGCAC CAGCACCTGT GAGTCTGCTC TCTTCTCAGC
---------- ---------- ---------- ---------- ----------
CTAAGCAGAT AGCAAAGNAG ATNATGGAGG ANCAATTGGT CATGGCCNTG
CTAAGCAGAT AGCAAAGAAG ATAATGGAGG AGCAATTGGT CATGGCCTTG
GTTTCCCTCk AAACaACgCT GCAGATTTAT CTGCACAAAC ATCTCCACTT
AAAAAAAGNG GGGGGGGGCG GNTTCCANAA AANAANAAAG GGTNCACCCN
GG-TTCTNGG NGGAGCCTGG CTAAANCCAA GCACCAGCAC CTGTGAGTCT
GGTTGCTCGG AGGAGCCTGG CTAAATCCAA GCACCAGCAC CTGTGAGTCT
GG-TGCTCGG AGGAGCCTGG NTAAATCCAA GCACCAGCAC CTGTGAGTCT
TGGCTCCCAA GTAAACCTGT AGCTTTGCCT CTTCTCCCAG CTCTCGTGCC
TGGCTCCCAA GTAAACCTGT AGCTTTGCCT CTTCTCCCAG CTCTCGTGCC
---------- ---------- ---------- ---------- ----------
GTTTCCCTCC AAACNACNCT GCAGATTTAT CTGCACAAAC ATCTCCACTT
GTTTCCCTCk AAACAACGCT GCAGATTTAT CTGCACAAAC ATCTCCACTT
tmGGGGGAAA GGTGGGTAGA TTCCAGTTCC CTGGACTACC TTCAGGAGGC
TNGGGGGNCN CCCCCCCCNC NNGNAAATCN TCCCTTTTTT TGANGGGCNA
GCTCTCTTCT CAGCTGGCTC CCAAGTAAAC CTGTAGCTTT NCCTCTTCTC
GCTCTCTTCT CAGCTGGCTC CCAAGTAAAC CTGTAGCTTT GCCTCTTCTC
GCTCTCTTCT CAGCTGGCTC CCAAGTAAAC CTGTAGCTTT GCCTCTTCTC
TCCTGAAGGT AGTCCAGGGA ACTGGAATCT ACCCACCTTT CCCCCAAAAG
TCCTGAAGGT AGTCCAGGGA ACTGGAATCT ACCCACCTTT CCCCCCNAAG
---------- ---------- ---------- ---------- ----------
TTGGGGGAAA GGTGGGTAGA TTCCAGTTCC CTGGACTACC TTCAGGAGGC
TTGGGGGAAA GGTGGGTAGA TTCCAGTTCC CTGGACTACC TTCAGGAGGC
ACGAGAGCTG GGAGAAGAGG cAAAGCTACA GGTTTACTTG GGAGCCAGCT
ANNNCATTTN CTTGNCCTTG AAGATTGACC NTGACTGCTC TGGCAAGAAG
CCAGCTCTCG TGCCTCCTGA AGGTAGTCCA GGGAACTGGA ATCTACCCAC
CCAGCTCTCG TGCCTCCTGA AGGTAGTCCA GGGAACTGGA ATCTACCCAC
CCAGCTCTCG TGCCTCCTGA AGGTAGTCCA GGGAACTGGA ATCTACCCAC
TGGAGATGTT TGTGCAGATA AATCTGCAGC GTTGTTTkGA GGGAAACCAA
TGGAGATGTT TGTGCAGATA AATCTGCAGC GTTGTTTTGA GGGAAACCAA
---------- ---------- ---------- ---------- ----------
ACGAGAGCTG GGAGAAGAGG CAAAGCTACA GGTTTACTTG GGAGCCAGCT
ACGAGAGCTG GGAGAAGAGG CAAAGCTACA GGTTTACTTG GGAGCCAGCT
GAGAAGAGAG CAGACTCACA GGTGCTGGTG CTTGGaTTTA gCCAGGCTCC
AAGAGGTGTC CTTACAGAGA CCTCTTTACT GACCAACTGA AGNATAGACT
CTTTCCCCCN AAAGTGGAGA TGTTTGTGCA GATAAATCTG CAGCGTTGTT
CTTTCCCCCC NAAGTGGAGA TGTTTGTGCA GATAAATCTG CAGCGTTGTT
CTTTCCCCCA AAAGTGGAGA TGTTTGTGCA GATAAATCTG CAGNGTNGTT
GGCCATGACC AATTGCTCCT CCATTATCTT CTTTGCTATC TGCTTAGGGT
GGCCATGACC AATTGCTCCT CCATTATCTT CTTTGCTATC TGCTTAGGGT
---------- ---------- ---------- ---------- ----------
GAGAAGAGAG CAGACTCACA GGTGCTGGTG CTTGGATTTA NCCAGGCTCC
GAGAAGAGAG CAGACTCACA GGTGCTGGTG CTTGGATTTA GCCAGGCTCC
tCCgAGkA-- CCTCATGCAT mTCCCAGCCC CTGGGCCCTA GCCCT-----
TACTGCTGGA CAATCTGCAT GGGCATCACC CCTCCCCGCA TGTAACCC-A
TTGAGGGAAA CCAAGGCCAT GACCAATTGC TCCTCCATTA TCTTCTTTGC
TTGAGGGAAA CCAAGGCCAT GACCAATTGC TCCTCCATTA TCTTCTTTGC
TGGAGGGAAA CCANGGCCAT GACCAATTGN TCCTCCATNA TCTNCTTTGC
ATAGATCTCT TCCTCCTGGA ATGGAACTCC TTGAGCACAG AGAGGGACAA
ATAGATCTCT TCCTCCTGGA ATGGAACTCC TTGAGCACAG AGAGGGACAA
---------- ---------- ---------- ---------- ----------
TCCGAGC--A CCTCATGCAT GTCCCAGCCC CTGGGCCCTA GCCCT-----
TCCGAGc--A CCTCATGCAT mTCCCAGCCC CTGGGCCCTA GCCCT-----
---------- ---------- ---------- ---------- ----------
AAAGAGGTGT CCAGAGCCAA GGCTTCTACC TTCATTGTCC CTCTCTGTGC
TATCTGCTNA GAGNANNCAA NNNAANNNA- ---------- ----------
TATCTGCTTA GGGTATAGAT CTCTTCCTCC TGGAATGGAA CTCCTTGAGC
TATCTGCTTA GGGTATAGAT CTCTTCCTCC TGGAATGGAA CTCCTTGAGC
TGAAGGTAGA AGCCTTGGCT CTGGACAmCT CTTTTGGG-t TACATGCG--
TGAAGGTAGA AGCCTTGGCT CTGGACACCT CTTTTGGG-T TACATGCGGT
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- TTCCTgCCCT GcAGTCTGAA GnGCCAAG-A -ACGnAATTC
TCAAGGAGTT CCATTCCAGG AGGAAGAGAT CTATACCCT- ----------
---------- ---------- ---------- ---------- ----------
ACAGAGAGGG ACAATGAAGG TAGAAGCCTT GGCTCTGGAC ACCTCTTTT-
ACAGAGAGGG ACAATGAAGG TAGAAGCCTT GGCTCTGGAC AACTCTTTNG
GAGTAgA-tt cAGCTTGGAC TTACCAGnTG ACTGGnAAAA nGGGGGnTTn
GAGTANA-NN NA-------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- TTCCTNCCCT GCAGTCTGCA GTGCC-AGCA CACA-AAT-C
---------- TTCCTGCCCT GCAGTCTGCA GTGCC-AGCA CACA-AAT-C
CCTCCACCAC AGGGTTTCG- GTTGGGTGGn TTGGAAGA-A AATTGTCTTA
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
GGGTTACATG CGGTGAGTAN ANNNA----- ---------- ----------
GGGTTACATG CGG--AGTAG ANTTCAGCTT GGACTTACCA GNTGACTGGN
CCCCATTTTC AnTCAAnnnC nnnTnTnnnC CCCAnnTTGA nCTTCnTCAA
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
CCTTCACCAC A-GGTNTCGT TTTGC-TGAA ATGG-AGACA AAT-GTCa-a
CCTrCACCAC AGGGTTTCG- GTTGs-TGAA wTGg-AGA-A AATTGTCTTA
GGATTCCAnT TGGnTAACAG TTTTCAAnnn nnnnnnnnnn nnnnnnnnnn
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
AAAANGGGGG NTTNCCCCAT TTTCANTCAA NNNCNNNTNT NNNCCCCANN
AnnnACnnnn ACCAAnCTTT nACTnTAnAA nnnnnTnAnA nnCCCTnCCn
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
g-a------- ---------- ---------- ---------- ----------
GGATTCCAnT TGGnTAACAG TTTTCAAnnn nnnnnnnnnn nnnnnnnnnn
nnnnTTnCnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
TTGANCTTCN TCAAANNNAC NNNNACCAAN CTTTNACTNT ANAANNNNNT
nCAnACAnAn nnnnnnnCCn nnnCnnCnnn CCnCnCCnnC CC--------
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
nnnnTTnCnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
NANANNCCCT NCCNNCANAC ANANNNNNNN NCCNNNNCNN CNNNCCNCNC
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnCC
---------- ------
---------- ------
---------- ------
CNNCCC---- ------
---------- ------
---------- ------
---------- ------
---------- ------
nnnnnnnnnn nnnnCC