201 lines
7.5 KiB
C
Executable file
201 lines
7.5 KiB
C
Executable file
#include <xview/cms.h>
|
|
int DataType;
|
|
int FileFormat,first_select = FALSE;
|
|
int Dirty,OldEditMode,EditMode = INSERT, EditDir = RIGHT;
|
|
int DisplayAttr = 0,OVERWRITE = FALSE;
|
|
int SCALE = 1;
|
|
int BlockInput = FALSE;
|
|
#ifdef SeeAlloc
|
|
int TotalCalloc = 0;
|
|
int TotalRealloc = 0;
|
|
#endif
|
|
char FileName[80];
|
|
char current_dir[1024];
|
|
|
|
/*
|
|
* Months of the year
|
|
*/
|
|
char month[12][6] =
|
|
{
|
|
"-JAN-","-FEB-","-MAR-","-APR-","-MAY-","-JUN-",
|
|
"-JUL-","-AUG-","-SEP-","-OCT-","-NOV-","-DEC-"
|
|
};
|
|
|
|
/*
|
|
* Tables for DNA/RNA <--> ASCII translation
|
|
*/
|
|
|
|
int Default_RNA_Trans[128] =
|
|
{
|
|
'-','A','C','M','G','R','S','V','U','W','Y','H','K','D','B','N',/*Upper*/
|
|
'~','a','c','m','g','r','s','v','u','w','y','h','k','d','b','n',/*lower*/
|
|
'-','A','C','M','G','R','S','V','U','W','Y','H','K','D','B','N',/*Upper select*/
|
|
'~','a','c','m','g','r','s','v','u','w','y','h','k','d','b','n',/*lwr select*/
|
|
'-','A','C','M','G','R','S','V','U','W','Y','H','K','D','B','N',/*extended*/
|
|
'~','a','c','m','g','r','s','v','u','w','y','h','k','d','b','n',/*extended*/
|
|
'-','A','C','M','G','R','S','V','U','W','Y','H','K','D','B','N',/*extended*/
|
|
'~','a','c','m','g','r','s','v','u','w','y','h','k','d','b','n',/*extended*/
|
|
};
|
|
|
|
int Default_DNA_Trans[128]={
|
|
'-','A','C','M','G','R','S','V','T','W','Y','H','K','D','B','N',/*Upper*/
|
|
'~','a','c','m','g','r','s','v','t','w','y','h','k','d','b','n',/*lower*/
|
|
'-','A','C','M','G','R','S','V','T','W','Y','H','K','D','B','N',/*Upper select*/
|
|
'~','a','c','m','g','r','s','v','t','w','y','h','k','d','b','n',/*lwr select*/
|
|
'-','A','C','M','G','R','S','V','T','W','Y','H','K','D','B','N',/*extended*/
|
|
'~','a','c','m','g','r','s','v','t','w','y','h','k','d','b','n',/*extended*/
|
|
'-','A','C','M','G','R','S','V','T','W','Y','H','K','D','B','N',/*extended*/
|
|
'~','a','c','m','g','r','s','v','t','w','y','h','k','d','b','n',/*extended*/
|
|
};
|
|
|
|
int Default_NA_RTrans[128]={
|
|
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0x00,
|
|
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
|
|
/* Upper case alpha */
|
|
0x01,0xe,0x02,0x0d,0,0,0x04,0x0b,0,0,0x0c,0,0x03,0x0f,0,0,0,0x05,0x06,0x08,
|
|
0x08,0x07,0x09,0x0f,0xa,0,0,0,0,0,0,0,
|
|
/* Lower case alpha */
|
|
0x11,0x1e,0x12,0x1d,0,0,0x14,0x1b,0,0,0x1c,0,0x13,0x1f,0,0,0,0x15,0x16,0x18,
|
|
0x18,0x17,0x19,0x1f,0x1a,0,0,0,0,0x10,0
|
|
};
|
|
|
|
|
|
/*
|
|
* RGB values for the simple palette
|
|
*/
|
|
|
|
Xv_singlecolor Default_Colors[16]= {
|
|
{0,128,0},
|
|
{255,192,0},
|
|
{255,0,255},
|
|
{225,0,0},
|
|
{0,192,192},
|
|
{0,192,0},
|
|
{0,0,255},
|
|
{128,0,255},
|
|
{0,0,0},
|
|
{36,36,36},
|
|
{72,72,72},
|
|
{109,109,109},
|
|
{145,145,145},
|
|
{182,182,182},
|
|
{218,218,218},
|
|
{255,255,255}
|
|
};
|
|
|
|
|
|
/*
|
|
* Character->color lookup table
|
|
*/
|
|
|
|
int Default_NAColor_LKUP[128] =
|
|
{
|
|
13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
|
|
13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
|
|
13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
|
|
13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
|
|
13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
|
|
13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
|
|
13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
|
|
13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13
|
|
};
|
|
|
|
int Default_PROColor_LKUP[128] =
|
|
{
|
|
12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,
|
|
12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,
|
|
12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,
|
|
12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,
|
|
12,2,8,3,8,8,6,2,4,5,12,4,5,5,8,12,2,
|
|
8,4,2,2,12,5,6,12,6,8,12,12,12,12,12,12,
|
|
2,8,3,8,8,6,2,4,5,12,4,5,5,8,12,2,
|
|
8,4,2,2,12,5,6,12,6,8,12,12,12,12,12
|
|
};
|
|
|
|
char vert_mito[512][4] =
|
|
{
|
|
"AAA","Lys", "AAC","Asn", "AAG","Lys", "AAT","Asn", "ACA","Thr",
|
|
"ACC","Thr", "ACG","Thr", "ACT","Thr", "AGA","Ter", "AGC","Ser",
|
|
"AGG","Ter", "AGT","Ser", "ATA","Met", "ATC","Ile", "ATG","Met",
|
|
"ATT","Ile", "CAA","Gln", "CAC","His", "CAG","Gln", "CAT","His",
|
|
"CCA","Pro", "CCC","Pro", "CCG","Pro", "CCT","Pro", "CGA","Arg",
|
|
"CGC","Arg", "CGG","Arg", "CGT","Arg", "CTA","Leu", "CTC","Leu",
|
|
"CTG","Leu", "CTT","Leu", "GAA","Glu", "GAC","Asp", "GAG","Glu",
|
|
"GAT","Asp", "GCA","Ala", "GCC","Ala", "GCG","Ala", "GCT","Ala",
|
|
"GGA","Gly", "GGC","Gly", "GGG","Gly", "GGT","Gly", "GTA","Val",
|
|
"GTC","Val", "GTG","Val", "GTT","Val", "TAA","Ter", "TAC","Tyr",
|
|
"TAG","Ter", "TAT","Tyr", "TCA","Ser", "TCC","Ser", "TCG","Ser",
|
|
"TCT","Ser", "TGA","Trp", "TGC","Cys", "TGG","Trp", "TGT","Cys",
|
|
"TTA","Leu", "TTC","Phe", "TTG","Leu", "TTT","Phe"
|
|
},
|
|
mycoplasma[512][4] =
|
|
{
|
|
"AAA","Lys", "AAC","Asn", "AAG","Lys", "AAT","Asn", "ACA","Thr",
|
|
"ACC","Thr", "ACG","Thr", "ACT","Thr", "AGA","Arg", "AGC","Ser",
|
|
"AGG","Arg", "AGT","Ser", "ATA","Ile", "ATC","Ile", "ATG","Met",
|
|
"ATT","Ile", "CAA","Gln", "CAC","His", "CAG","Gln", "CAT","His",
|
|
"CCA","Pro", "CCC","Pro", "CCG","Pro", "CCT","Pro", "CGA","Arg",
|
|
"CGC","Arg", "CGG","Arg", "CGT","Arg", "CTA","Leu", "CTC","Leu",
|
|
"CTG","Leu", "CTT","Leu", "GAA","Glu", "GAC","Asp", "GAG","Glu",
|
|
"GAT","Asp", "GCA","Ala", "GCC","Ala", "GCG","Ala", "GCT","Ala",
|
|
"GGA","Gly", "GGC","Gly", "GGG","Gly", "GGT","Gly", "GTA","Val",
|
|
"GTC","Val", "GTG","Val", "GTT","Val", "TAA","Ter", "TAC","Tyr",
|
|
"TAG","Ter", "TAT","Tyr", "TCA","Ser", "TCC","Ser", "TCG","Ser",
|
|
"TCT","Ser", "TGA","Trp", "TGC","Cys", "TGG","Trp", "TGT","Cys",
|
|
"TTA","Leu", "TTC","Phe", "TTG","Leu", "TTT","Phe" },
|
|
universal[512][4] =
|
|
{
|
|
"AAA","Lys", "AAC","Asn", "AAG","Lys", "AAT","Asn", "ACA","Thr",
|
|
"ACC","Thr", "ACG","Thr", "ACT","Thr", "AGA","Arg", "AGC","Ser",
|
|
"AGG","Arg", "AGT","Ser", "ATA","Ile", "ATC","Ile", "ATG","Met",
|
|
"ATT","Ile", "CAA","Gln", "CAC","His", "CAG","Gln", "CAT","His",
|
|
"CCA","Pro", "CCC","Pro", "CCG","Pro", "CCT","Pro", "CGA","Arg",
|
|
"CGC","Arg", "CGG","Arg", "CGT","Arg", "CTA","Leu", "CTC","Leu",
|
|
"CTG","Leu", "CTT","Leu", "GAA","Glu", "GAC","Asp", "GAG","Glu",
|
|
"GAT","Asp", "GCA","Ala", "GCC","Ala", "GCG","Ala", "GCT","Ala",
|
|
"GGA","Gly", "GGC","Gly", "GGG","Gly", "GGT","Gly", "GTA","Val",
|
|
"GTC","Val", "GTG","Val", "GTT","Val", "TAA","Ter", "TAC","Tyr",
|
|
"TAG","Ter", "TAT","Tyr", "TCA","Ser", "TCC","Ser", "TCG","Ser",
|
|
"TCT","Ser", "TGA","Ter", "TGC","Cys", "TGG","Trp", "TGT","Cys",
|
|
"TTA","Leu", "TTC","Phe", "TTG","Leu", "TTT","Phe" },
|
|
yeast[512][4] =
|
|
{
|
|
"AAA","Lys", "AAC","Asn", "AAG","Lys", "AAT","Asn", "ACA","Thr",
|
|
"ACC","Thr", "ACG","Thr", "ACT","Thr", "AGA","Arg", "AGC","Ser",
|
|
"AGG","Arg", "AGT","Ser", "ATA","Met", "ATC","Ile", "ATG","Met",
|
|
"ATT","Ile", "CAA","Gln", "CAC","His", "CAG","Gln", "CAT","His",
|
|
"CCA","Pro", "CCC","Pro", "CCG","Pro", "CCT","Pro", "CGA","Arg",
|
|
"CGC","Arg", "CGG","Arg", "CGT","Arg", "CTA","Thr", "CTC","Thr",
|
|
"CTG","Thr", "CTT","Thr", "GAA","Glu", "GAC","Asp", "GAG","Glu",
|
|
"GAT","Asp", "GCA","Ala", "GCC","Ala", "GCG","Ala", "GCT","Ala",
|
|
"GGA","Gly", "GGC","Gly", "GGG","Gly", "GGT","Gly", "GTA","Val",
|
|
"GTC","Val", "GTG","Val", "GTT","Val", "TAA","Ter", "TAC","Tyr",
|
|
"TAG","Ter", "TAT","Tyr", "TCA","Ser", "TCC","Ser", "TCG","Ser",
|
|
"TCT","Ser", "TGA","Trp", "TGC","Cys", "TGG","Trp", "TGT","Cys",
|
|
"TTA","Leu", "TTC","Phe", "TTG","Leu", "TTT","Phe"
|
|
};
|
|
|
|
|
|
char three_to_one[23][5] = {
|
|
"AlaA", "ArgR", "AsnN", "AspD",
|
|
"AsxB", "CysC", "GlnQ", "GluE",
|
|
"GlxZ", "GlyG", "HisH", "IleI",
|
|
"LeuL", "LysK", "MetM", "PheF",
|
|
"ProP", "SerS", "ThrT", "TrpW",
|
|
"TyrY", "ValV", "Ter*"
|
|
};
|
|
|
|
|
|
|
|
static unsigned char grey0[] = {0,0,0,0,0,0,0,0};
|
|
static unsigned char grey1[] = {138,0,0,0,138,0,0,0};
|
|
static unsigned char grey2[] = {138,0,34,0,138,0,34,0};
|
|
static unsigned char grey3[] = {138,85,34,85,138,85,34,85};
|
|
static unsigned char grey4[] = {117,170,221,170,117,170,221,170};
|
|
static unsigned char grey5[] = {117,255,221,255,117,255,221,255};
|
|
static unsigned char grey6[] = {117,255,255,255,117,255,255,255};
|
|
static unsigned char grey7[] = {255,255,255,255,255,255,255,255};
|
|
|
|
unsigned char *greys[] = {grey1,grey3,grey3,grey1,grey2,grey3,grey0,grey3,
|
|
grey0,grey1,grey2,grey3,grey4,grey5,grey6,grey7};
|
|
Pixmap *grey_pm[16];
|