89 lines
1.7 KiB
C
Executable File
89 lines
1.7 KiB
C
Executable File
#include <stdio.h>
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#include <string.h>
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typedef struct Sequence {
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int len;
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char name[80];
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char type[8];
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char *nuc;
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} Sequence;
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main()
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{
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char a[5000], b[5000], cinline[132];
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int pos1, pos2, pos3, i, j, k, FLAG;
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Sequence pair[2];
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for (j = 0; j < 5000; j++) b[j] = '-';
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FLAG = (int)gets(cinline);
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for (j = 0; FLAG; j++) {
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FLAG = (int)gets(cinline);
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sscanf(cinline, "%d", &pos1);
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if ((sscanf(cinline, "%*6c %c %d %d %d", &(a[j]), &k, &pos2,
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&pos3) == 4) &&
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(FLAG)) {
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if (pos3 != 0) {
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if (pos1 < pos3) {
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b[pos1 - 1] = '[';
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b[pos3 - 1] = ']';
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}
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else {
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b[pos3 - 1] = '[';
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b[pos1 - 1] = ']';
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}
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}
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}
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else {
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pair[0].len = j;
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strcpy(pair[0].name, "HELIX");
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strcpy(pair[0].type, "TEXT");
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pair[1].len = j;
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/*
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sscanf(cinline,"%*24c
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%s",pair[1].name);
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*/
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strcpy(pair[1].name, "Sequence");
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strcpy(pair[1].type, "RNA");
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pair[0].nuc = b;
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pair[1].nuc = a;
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WriteGen(pair, stdout, 2);
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for (j = 0; j < 5000; j++) b[j] = '-';
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j = -1;
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}
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}
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exit(0);
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}
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WriteGen(seq, file, numseq) Sequence *seq;
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FILE *file;
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int numseq;
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{
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register i, j;
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char temp[14];
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for (j = 0; j < numseq; j++) fprintf(file, "%-.12s\n", seq[j].name);
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fprintf(file, "ZZZZZZZZZZ\n");
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for (j = 0; j < numseq; j++) {
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strcpy(temp, seq[j].name);
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for (i = strlen(temp); i < 13; i++) temp[i] = ' ';
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temp[i] = '\0';
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fprintf(file, "LOCUS %-.12s %s %d BP\n", temp,
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seq[j].type, seq[j].len);
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fprintf(file, "ORIGIN");
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for (i = 0; i < seq[j].len; i++) {
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if (i % 60 == 0) fprintf(file, "\n%9d", i + 1);
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if (i % 10 == 0) fprintf(file, " ");
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fprintf(file, "%c", seq[j].nuc[i]);
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}
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fprintf(file, "\n//\n");
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}
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return;
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}
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