77 lines
4.0 KiB
Plaintext
Executable File
77 lines
4.0 KiB
Plaintext
Executable File
Data Arangement:
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Y
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------------------
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(X) A C G U
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------------------
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5' ==> 3'
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AX
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AY
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3' <== 5'
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(A) . . . .
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(C) . . . .
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(G) . . . .
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(U) -0.7 -0.1 -0.7 -0.1
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--------------------------------
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STACKING ENERGIES : TERMINAL MISMATCHES AND BASE-PAIRS.
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Y Y Y Y
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------------------ ------------------ ------------------ ------------------
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A C G U A C G U A C G U A C G U
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------------------ ------------------ ------------------ ------------------
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5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
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AX AX AX AX
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AY CY GY UY
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3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
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. . . -1.0 . . . -0.7 . . . -1.1 -0.8 -1.0 -1.0 -1.0
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. . -1.1 . . . -1.1 . . . -1.6 . -0.7 -0.7 -0.7 -0.7
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. -1.9 . -1.5 . -1.0 . -0.9 . -1.9 . -1.5 -0.8 -1.0 -1.0 -1.0
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-0.8 . -0.8 . -0.7 . -0.7 . -0.8 . -0.8 . -0.8 -0.8 -0.8 -0.8
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Y Y Y Y
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------------------ ------------------ ------------------ ------------------
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A C G U A C G U A C G U A C G U
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------------------ ------------------ ------------------ ------------------
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5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
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CX CX CX CX
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AY CY GY UY
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3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
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. . . -0.8 . . . -0.6 -1.9 -2.0 -1.9 -1.9 . . . -0.6
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. . -1.3 . . . -0.6 . -1.0 -1.1 -1.0 -0.8 . . -0.8 .
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. -2.0 . -1.4 . -1.1 . -0.9 -1.9 -1.9 -1.9 -1.9 . -1.5 . -1.1
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-1.0 . -1.0 . -0.7 . -0.7 . -1.4 -1.5 -1.4 -1.2 -0.8 . -0.8 .
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Y Y Y Y
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------------------ ------------------ ------------------ ------------------
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A C G U A C G U A C G U A C G U
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------------------ ------------------ ------------------ ------------------
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5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
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GX GX GX GX
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AY CY GY UY
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3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
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. . . -1.1 -1.1 -1.3 -1.3 -1.3 . . . -1.2 -0.8 -1.0 -1.0 -1.0
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. . -1.3 . -1.1 -0.6 -0.6 -0.5 . . -1.4 . -0.7 -0.7 -0.7 -0.7
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. -1.9 . -1.5 -1.6 -1.5 -1.4 -1.5 . -1.9 . -1.6 -0.8 -1.0 -1.0 -1.0
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-1.0 . -1.0 . -0.8 -0.8 -0.8 -0.7 -1.0 . -1.0 . -0.8 -0.8 -0.8 -0.8
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Y Y Y Y
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------------------ ------------------ ------------------ ------------------
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A C G U A C G U A C G U A C G U
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------------------ ------------------ ------------------ ------------------
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5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
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UX UX UX UX
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AY CY GY UY
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3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
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-1.0 -0.8 -1.1 -0.9 . . . -0.5 -1.5 -1.4 -1.5 -1.4 . . . -0.5
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-0.7 -0.6 -0.3 -0.5 . . -0.5 . -0.9 -0.9 -0.7 -0.7 . . -0.7 .
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-1.1 -0.9 -1.2 -0.9 . -0.8 . -0.7 -1.5 -1.4 -1.6 -1.4 . -1.2 . -0.9
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-0.3 -0.6 -0.3 -0.5 -0.7 . -0.7 . -0.9 -1.1 -0.9 -0.9 -0.8 . -0.8 .
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