gde_linux/ZUKER/dangle.dat

90 lines
5.3 KiB
Plaintext
Executable File

X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
AX AX AX AX
A C G U
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . . . . . -0.8 -0.5 -0.8 -0.6
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
CX CX CX CX
A C G U
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . -1.7 -0.8 -1.7 -1.2 . . . .
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
GX GX GX GX
A C G U
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . -1.1 -0.4 -1.3 -0.6 . . . . -0.8 -0.5 -0.8 -0.6
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
UX UX UX UX
A C G U
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-0.7 -0.1 -0.7 -0.1 . . . . -1.2 -0.5 -1.2 -0.7 . . . .
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
A A A A
AX CX GX UX
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . . . . . -0.3 -0.1 -0.2 -0.2
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
C C C C
AX CX GX UX
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . -0.2 -0.3 -0.0 -0.0 . . . .
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
G G G G
AX CX GX UX
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . -0.5 -0.2 -0.2 -0.1 . . . . -0.2 -0.2 -0.2 -0.2
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
U U U U
AX CX GX UX
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-0.3 -0.3 -0.4 -0.2 . . . . -0.2 -0.2 -0.2 -0.2 . . . .