71 lines
1.5 KiB
C
71 lines
1.5 KiB
C
#include "Flatio.c"
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#define WIDTH 50
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main()
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{
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struct data_format data[10000];
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int i,j,k,numseqs,maxlen = 0,minlen=999999999;
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int lines_printed;
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int len[1000];
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char a,b;
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numseqs = ReadFlat(stdin,data,10000);
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if(numseqs == 0)
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exit(1);
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for(k=0;k<numseqs;k++)
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{
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minlen = MIN(minlen,data[k].offset);
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maxlen = MAX(maxlen,data[j].length+data[k].offset);
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}
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for(j=minlen;j<maxlen;j+=WIDTH)
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{
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lines_printed = FALSE;
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for (i=0;i<numseqs;i++)
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{
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data[i].name[19] = '\0';
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if(((data[i].offset > j+WIDTH) ||
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(data[i].offset+data[i].length<j)));
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else
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{
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lines_printed = TRUE;
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printf("\n%20s%5d ", data[i].name,
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indx(j,&(data[i])));
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for(k=j;k<j+WIDTH;k++)
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{
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if((k<data[i].length+data[i].offset)
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&& (k>=data[i].offset))
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putchar(data[i].nuc[k-data[i].offset]);
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else putchar(' ');
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}
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}
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}
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if(lines_printed)
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{
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printf("\n |---------|---------|---------|---------|---------\n");
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printf(" %6d %6d %6d %6d %6d\n\n",j+1,j+11,j+21,j+31,j+41);
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}
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}
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putchar('\n');
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exit(0);
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}
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int indx(pos,seq)
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int pos;
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struct data_format *seq;
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{
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int j,count=0;
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if(pos < seq->offset)
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return (0);
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if(pos>seq->offset+seq->length)
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pos = seq->offset+seq->length;
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pos -= seq->offset;
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for(j=0;j<pos;j++)
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if(seq->nuc[j] != '-')
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if(seq->nuc[j] != '~')
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count++;
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return (count);
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}
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