202 lines
7.5 KiB
C
Executable File
202 lines
7.5 KiB
C
Executable File
#include <xview/cms.h>
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int DataType;
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int FileFormat,first_select = FALSE;
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int Dirty,OldEditMode,EditMode = INSERT, EditDir = RIGHT;
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int DisplayAttr = 0,OVERWRITE = FALSE;
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int SCALE = 1;
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int BlockInput = FALSE;
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#ifdef SeeAlloc
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int TotalCalloc = 0;
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int TotalRealloc = 0;
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#endif
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char FileName[80];
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char current_dir[1024];
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/*
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* Months of the year
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*/
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char month[12][6] =
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{
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"-JAN-","-FEB-","-MAR-","-APR-","-MAY-","-JUN-",
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"-JUL-","-AUG-","-SEP-","-OCT-","-NOV-","-DEC-"
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};
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/*
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* Tables for DNA/RNA <--> ASCII translation
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*/
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int Default_RNA_Trans[128] =
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{
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'-','A','C','M','G','R','S','V','U','W','Y','H','K','D','B','N',/*Upper*/
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'~','a','c','m','g','r','s','v','u','w','y','h','k','d','b','n',/*lower*/
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'-','A','C','M','G','R','S','V','U','W','Y','H','K','D','B','N',/*Upper select*/
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'~','a','c','m','g','r','s','v','u','w','y','h','k','d','b','n',/*lwr select*/
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'-','A','C','M','G','R','S','V','U','W','Y','H','K','D','B','N',/*extended*/
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'~','a','c','m','g','r','s','v','u','w','y','h','k','d','b','n',/*extended*/
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'-','A','C','M','G','R','S','V','U','W','Y','H','K','D','B','N',/*extended*/
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'~','a','c','m','g','r','s','v','u','w','y','h','k','d','b','n',/*extended*/
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};
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int Default_DNA_Trans[128]={
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'-','A','C','M','G','R','S','V','T','W','Y','H','K','D','B','N',/*Upper*/
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'~','a','c','m','g','r','s','v','t','w','y','h','k','d','b','n',/*lower*/
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'-','A','C','M','G','R','S','V','T','W','Y','H','K','D','B','N',/*Upper select*/
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'~','a','c','m','g','r','s','v','t','w','y','h','k','d','b','n',/*lwr select*/
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'-','A','C','M','G','R','S','V','T','W','Y','H','K','D','B','N',/*extended*/
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'~','a','c','m','g','r','s','v','t','w','y','h','k','d','b','n',/*extended*/
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'-','A','C','M','G','R','S','V','T','W','Y','H','K','D','B','N',/*extended*/
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'~','a','c','m','g','r','s','v','t','w','y','h','k','d','b','n',/*extended*/
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};
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int Default_NA_RTrans[128]={
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0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0x00,
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0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
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/* Upper case alpha */
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0x01,0xe,0x02,0x0d,0,0,0x04,0x0b,0,0,0x0c,0,0x03,0x0f,0,0,0,0x05,0x06,0x08,
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0x08,0x07,0x09,0x0f,0xa,0,0,0,0,0,0,0,
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/* Lower case alpha */
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0x11,0x1e,0x12,0x1d,0,0,0x14,0x1b,0,0,0x1c,0,0x13,0x1f,0,0,0,0x15,0x16,0x18,
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0x18,0x17,0x19,0x1f,0x1a,0,0,0,0,0x10,0
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};
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/*
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* RGB values for the simple palette
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*/
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Xv_singlecolor Default_Colors[16]= {
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{0,128,0},
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{255,192,0},
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{255,0,255},
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{225,0,0},
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{0,192,192},
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{0,192,0},
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{0,0,255},
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{128,0,255},
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{0,0,0},
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{36,36,36},
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{72,72,72},
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{109,109,109},
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{145,145,145},
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{182,182,182},
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{218,218,218},
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{255,255,255}
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};
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/*
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* Character->color lookup table
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*/
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int Default_NAColor_LKUP[128] =
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{
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13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
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13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
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13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
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13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
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13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
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13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
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13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13,
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13,3,6,13,8,13,13,13,5,13,13,13,13,13,13,13
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};
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int Default_PROColor_LKUP[128] =
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{
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12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,
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12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,
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12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,
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12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,
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12,2,8,3,8,8,6,2,4,5,12,4,5,5,8,12,2,
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8,4,2,2,12,5,6,12,6,8,12,12,12,12,12,12,
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2,8,3,8,8,6,2,4,5,12,4,5,5,8,12,2,
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8,4,2,2,12,5,6,12,6,8,12,12,12,12,12
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};
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char vert_mito[512][4] =
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{
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"AAA","Lys", "AAC","Asn", "AAG","Lys", "AAT","Asn", "ACA","Thr",
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"ACC","Thr", "ACG","Thr", "ACT","Thr", "AGA","Ter", "AGC","Ser",
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"AGG","Ter", "AGT","Ser", "ATA","Met", "ATC","Ile", "ATG","Met",
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"ATT","Ile", "CAA","Gln", "CAC","His", "CAG","Gln", "CAT","His",
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"CCA","Pro", "CCC","Pro", "CCG","Pro", "CCT","Pro", "CGA","Arg",
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"CGC","Arg", "CGG","Arg", "CGT","Arg", "CTA","Leu", "CTC","Leu",
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"CTG","Leu", "CTT","Leu", "GAA","Glu", "GAC","Asp", "GAG","Glu",
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"GAT","Asp", "GCA","Ala", "GCC","Ala", "GCG","Ala", "GCT","Ala",
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"GGA","Gly", "GGC","Gly", "GGG","Gly", "GGT","Gly", "GTA","Val",
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"GTC","Val", "GTG","Val", "GTT","Val", "TAA","Ter", "TAC","Tyr",
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"TAG","Ter", "TAT","Tyr", "TCA","Ser", "TCC","Ser", "TCG","Ser",
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"TCT","Ser", "TGA","Trp", "TGC","Cys", "TGG","Trp", "TGT","Cys",
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"TTA","Leu", "TTC","Phe", "TTG","Leu", "TTT","Phe"
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},
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mycoplasma[512][4] =
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{
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"AAA","Lys", "AAC","Asn", "AAG","Lys", "AAT","Asn", "ACA","Thr",
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"ACC","Thr", "ACG","Thr", "ACT","Thr", "AGA","Arg", "AGC","Ser",
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"AGG","Arg", "AGT","Ser", "ATA","Ile", "ATC","Ile", "ATG","Met",
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"ATT","Ile", "CAA","Gln", "CAC","His", "CAG","Gln", "CAT","His",
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"CCA","Pro", "CCC","Pro", "CCG","Pro", "CCT","Pro", "CGA","Arg",
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"CGC","Arg", "CGG","Arg", "CGT","Arg", "CTA","Leu", "CTC","Leu",
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"CTG","Leu", "CTT","Leu", "GAA","Glu", "GAC","Asp", "GAG","Glu",
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"GAT","Asp", "GCA","Ala", "GCC","Ala", "GCG","Ala", "GCT","Ala",
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"GGA","Gly", "GGC","Gly", "GGG","Gly", "GGT","Gly", "GTA","Val",
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"GTC","Val", "GTG","Val", "GTT","Val", "TAA","Ter", "TAC","Tyr",
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"TAG","Ter", "TAT","Tyr", "TCA","Ser", "TCC","Ser", "TCG","Ser",
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"TCT","Ser", "TGA","Trp", "TGC","Cys", "TGG","Trp", "TGT","Cys",
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"TTA","Leu", "TTC","Phe", "TTG","Leu", "TTT","Phe" },
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universal[512][4] =
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{
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"AAA","Lys", "AAC","Asn", "AAG","Lys", "AAT","Asn", "ACA","Thr",
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"ACC","Thr", "ACG","Thr", "ACT","Thr", "AGA","Arg", "AGC","Ser",
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"AGG","Arg", "AGT","Ser", "ATA","Ile", "ATC","Ile", "ATG","Met",
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"ATT","Ile", "CAA","Gln", "CAC","His", "CAG","Gln", "CAT","His",
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"CCA","Pro", "CCC","Pro", "CCG","Pro", "CCT","Pro", "CGA","Arg",
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"CGC","Arg", "CGG","Arg", "CGT","Arg", "CTA","Leu", "CTC","Leu",
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"CTG","Leu", "CTT","Leu", "GAA","Glu", "GAC","Asp", "GAG","Glu",
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"GAT","Asp", "GCA","Ala", "GCC","Ala", "GCG","Ala", "GCT","Ala",
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"GGA","Gly", "GGC","Gly", "GGG","Gly", "GGT","Gly", "GTA","Val",
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"GTC","Val", "GTG","Val", "GTT","Val", "TAA","Ter", "TAC","Tyr",
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"TAG","Ter", "TAT","Tyr", "TCA","Ser", "TCC","Ser", "TCG","Ser",
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"TCT","Ser", "TGA","Ter", "TGC","Cys", "TGG","Trp", "TGT","Cys",
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"TTA","Leu", "TTC","Phe", "TTG","Leu", "TTT","Phe" },
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yeast[512][4] =
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{
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"AAA","Lys", "AAC","Asn", "AAG","Lys", "AAT","Asn", "ACA","Thr",
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"ACC","Thr", "ACG","Thr", "ACT","Thr", "AGA","Arg", "AGC","Ser",
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"AGG","Arg", "AGT","Ser", "ATA","Met", "ATC","Ile", "ATG","Met",
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"ATT","Ile", "CAA","Gln", "CAC","His", "CAG","Gln", "CAT","His",
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"CCA","Pro", "CCC","Pro", "CCG","Pro", "CCT","Pro", "CGA","Arg",
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"CGC","Arg", "CGG","Arg", "CGT","Arg", "CTA","Thr", "CTC","Thr",
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"CTG","Thr", "CTT","Thr", "GAA","Glu", "GAC","Asp", "GAG","Glu",
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"GAT","Asp", "GCA","Ala", "GCC","Ala", "GCG","Ala", "GCT","Ala",
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"GGA","Gly", "GGC","Gly", "GGG","Gly", "GGT","Gly", "GTA","Val",
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"GTC","Val", "GTG","Val", "GTT","Val", "TAA","Ter", "TAC","Tyr",
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"TAG","Ter", "TAT","Tyr", "TCA","Ser", "TCC","Ser", "TCG","Ser",
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"TCT","Ser", "TGA","Trp", "TGC","Cys", "TGG","Trp", "TGT","Cys",
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"TTA","Leu", "TTC","Phe", "TTG","Leu", "TTT","Phe"
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};
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char three_to_one[23][5] = {
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"AlaA", "ArgR", "AsnN", "AspD",
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"AsxB", "CysC", "GlnQ", "GluE",
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"GlxZ", "GlyG", "HisH", "IleI",
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"LeuL", "LysK", "MetM", "PheF",
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"ProP", "SerS", "ThrT", "TrpW",
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"TyrY", "ValV", "Ter*"
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};
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static unsigned char grey0[] = {0,0,0,0,0,0,0,0};
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static unsigned char grey1[] = {138,0,0,0,138,0,0,0};
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static unsigned char grey2[] = {138,0,34,0,138,0,34,0};
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static unsigned char grey3[] = {138,85,34,85,138,85,34,85};
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static unsigned char grey4[] = {117,170,221,170,117,170,221,170};
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static unsigned char grey5[] = {117,255,221,255,117,255,221,255};
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static unsigned char grey6[] = {117,255,255,255,117,255,255,255};
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static unsigned char grey7[] = {255,255,255,255,255,255,255,255};
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unsigned char *greys[] = {grey1,grey3,grey3,grey1,grey2,grey3,grey0,grey3,
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grey0,grey1,grey2,grey3,grey4,grey5,grey6,grey7};
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Pixmap *grey_pm[16];
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