item:MFOLD
itemmethod:shelltool (tr 'a-z' 'A-Z' < seqGB > .GDE.tmp.caps; ZUKERGDE.sh .GDE.tmp.caps $CT $GDE_HELP_DIR/ZUKER/ > out1 && $METHOD < out1; Zuk_to_gen < $CT >file.gen; gde file.gen& textedit RegionTable; /bin/rm -f RegionTable out1 seqGB* .GDE.tmp.caps)&itemhelp:MFOLD.help
 
in:seqGB 
informat:genbank
insave:

arg:METHOD
argtype:chooser
arglabel:RNA type
argchoice:Fold Linear RNA:lrna
argchoice:Fold Circular RNA:crna
 
arg:CT   
argtype:text
arglabel:ct File Name
argtext:ctFile
 
item:Draw Secondary structure
itemmethod:(LoopTool $TEMPLATE in1 ; /bin/rm -f in1) &
itemhelp:LoopTool.help
 
arg:TEMPLATE
argtype:chooser
arglabel:Use template file ./loop.temp?
argchoice:No:
argchoice:Yes:-t loop.temp
 
in:in1   
informat:genbank
insave: