clean: example db
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3 changed files with 0 additions and 5829 deletions
119
db/HCVCG.fasta
119
db/HCVCG.fasta
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>gi|9626438|ref|NC_001433.1| Hepatitis C virus, complete genome
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TTGGGGGCGACACTCCACCATAGATCACTCCCCTGTGAGGAACTACTGTCTTCACGCAGAAAGCGTCTAGCCATGGCGTT
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AGTATGAGTGTTGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGA
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ATTGCCAGGACGACCGGGTCCTTTCTTGGATCAACCCGCTCAATGCCTGGAGATTTGGGCGTGCCCCCGCGAGACTGCTA
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GCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGA
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CCGTGCATCATGAGCACAAATCCTAAACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTTAAGTT
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CCCGGGCGGTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGTGCGCGCGACTAGGA
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AGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCCCAAGGCTCGCCGGCCCGAGGGTAGGACCTGGGCT
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CAGCCCGGGTACCCTTGGCCCCTCTATGGCAACGAGGGTATGGGGTGGGCAGGATGGCTCCTGTCACCCCGTGGCTCTCG
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GCCTAGTTGGGGCCCCACAGACCCCCGGCGTAGGTCGCGTAATTTGGGTAAGGTCATCGATACCCTTACATGCGGCTTCG
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CCGACCTCATGGGGTACATTCCGCTTGTCGGCGCCCCCCTAGGGGGCGCTGCCAGGGCCCTGGCACATGGTGTCCGGGTT
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CTGGAGGACGGCGTGAACTATGCAACAGGGAATCTGCCCGGTTGCTCTTTCTCTATCTTCCTCTTAGCTTTGCTGTCTTG
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TTTGACCATCCCAGCTTCCGCTTACGAGGTGCGCAACGTGTCCGGGATATACCATGTCACGAACGACTGCTCCAACTCAA
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GTATTGTGTATGAGGCAGCGGACATGATCATGCACACCCCCGGGTGCGTGCCCTGCGTCCGGGAGAGTAATTTCTCCCGT
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TGCTGGGTAGCGCTCACTCCCACGCTCGCGGCCAGGAACAGCAGCATCCCCACCACGACAATACGACGCCACGTCGATTT
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GCTCGTTGGGGCGGCTGCTCTCTGTTCCGCTATGTACGTTGGGGATCTCTGCGGATCCGTTTTTCTCGTCTCCCAGCTGT
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TCACCTTCTCACCTCGCCGGTATGAGACGGTACAAGATTGCAATTGCTCAATCTATCCCGGCCACGTATCAGGTCACCGC
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ATGGCTTGGGATATGATGATGAACTGGTCACCTACAACGGCCCTAGTGGTATCGCAGCTACTCCGGATCCCACAAGCCGT
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CGTGGACATGGTGGCGGGGGCCCACTGGGGTGTCCTAGCGGGCCTTGCCTACTATTCCATGGTGGGGAACTGGGCTAAGG
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TCTTGATTGTGATGCTACTCTTTGCTGGCGTTGACGGGCACACCCACGTGACAGGGGGAAGGGTAGCCTCCAGCACCCAG
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AGCCTCGTGTCCTGGCTCTCACAAGGCCCATCTCAGAAAATCCAACTCGTGAACACCAACGGCAGCTGGCACATCAACAG
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GACCGCTCTGAATTGCAATGACTCCCTCCAAACTGGGTTCATTGCTGCGCTGTTCTACGCACACAGGTTCAACGCGTCCG
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GGTGCCCAGAGCGCATGGCTAGCTGCCGCCCCATCGATGAGTTCGCTCAGGGGTGGGGTCCCATCACTCATGATATGCCT
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GAGAGCTCGGACCAGAGGCCATATTGCTGGCACTACGCGCCTCGACCGTGCGGGATCGTGCCTGCGTCGCAGGTGTGTGG
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TCCAGTGTATTGCTTCACTCCGAGCCCTGTTGTAGTGGGGACGACCGATCGTTTCGGCGCTCCTACGTATAGCTGGGGGG
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AGAATGAGACAGACGTGCTGCTACTTAGCAACACGCGGCCGCCTCAAGGCAACTGGTTTGGGTGCACGTGGATGAACAGC
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ACTGGGTTCACCAAGACGTGCGGGGGCCCTCCGTGCAACATCGGGGGGGTCGGCAACAACACCTTGGTCTGCCCCACGGA
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TTGCTTCCGGAAGCACCCCGAGGCCACTTACACAAAGTGTGGCTCGGGGCCCTGGTTGACACCCAGGTGCATGGTTGACT
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ACCCATACAGGCTCTGGCACTACCCCTGCACTGTTAACTTTACCGTCTTTAAGGTCAGGATGTATGTGGGGGGCGTGGAG
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CACAGGCTCAATGCTGCATGCAATTGGACTCGAGGAGAGCGCTGTGACTTGGAGGACAGGGATAGGTCAGAACTCAGCCC
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GCTGCTGCTGTCTACAACAGAGTGGCAGATACTGCCCTGTTCCTTCACCACCCTACCGGCCCTGTCCACTGGCTTGATCC
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ATCTTCACCGGAACATCGTGGACGTGCAATACCTGTACGGTATAGGGTCGGCAGTTGTCTCCTTTGCAATCAAATGGGAG
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TATATCCTGTTGCTTTTCCTTCTTCTGGCGGACGCGCGCGTCTGTGCCTGCTTGTGGATGATGCTGCTGATAGCCCAGGC
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TGAGGCCACCTTAGAGAACCTGGTGGTCCTCAATGCGGCGTCTGTGGCCGGAGCGCATGGCCTTCTCTCCTTCCTCGTGT
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TCTTCTGCGCCGCCTGGTACATCAAAGGCAGGCTGGTCCCTGGGGCGGCATATGCTCTCTATGGCGTATGGCCGTTGCTC
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CTGCTCTTGCTGGCCTTACCACCACGAGCTTATGCCATGGACCGAGAGATGGCTGCATCGTGCGGAGGCGCGGTTTTTGT
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AGGTCTGGTACTCTTGACCTTGTCACCATACTATAAGGTGTTCCTCGCTAGGCTCATATGGTGGTTACAATATTTTATCA
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CCAGAGCCGAGGCGCACTTGCAAGTGTGGGTCCCCCCTCTCAATGTTCGGGGAGGCCGCGATGCCATCATCCTCCTTACA
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TGCGCGGTCCATCCAGAGCTAATCTTTGACATCACCAAACTCCTGCTCGCCATACTCGGTCCGCTCATGGTGCTCCAGGC
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TGGCATAACTAGAGTGCCGTACTTTGTACGCGCTCAGGGGCTCATCCGTGCATGCATGTTAGTGCGGAAGGTCGCTGGAG
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GCCACTATGTCCAAATGGCCTTCATGAAGCTGGCCGCGCTGACAGGTACGTACGTATATGACCATCTTACTCCACTGCGG
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GATTGGGCCCACGCGGGCCTACGAGACCTTGCGGTGGCAGTAGAGCCCGTCGTCTTCTCTGACATGGAGACTAAACTCAT
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CACCTGGGGGGCAGACACCGCGGCGTGTGGGGACATCATCTCGGGTCTACCAGTCTCCGCCCGAAGGGGGAAGGAGATAC
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TTCTAGGACCGGCCGATAGTTTTGGAGAGCAGGGGTGGCGGCTCCTTGCGCCTATCACGGCCTATTCCCAACAAACGCGG
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GGCCTGCTTGGCTGTATCATCACTAGCCTCACAGGTCGGGACAAGAACCAGGTCGATGGGGAGGTTCAGGTGCTCTCCAC
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CGCAACGCAATCTTTCCTGGCGACCTGCGTCAATGGCGTGTGTTGGACCGTCTACCATGGTGCCGGCTCGAAGACCCTGG
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CCGGCCCGAAGGGTCCAATCACCCAAATGTACACCAATGTAGACCAGGACCTCGTCGGCTGGCCGGCGCCCCCCGGGGCG
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CGCTCCATGACACCGTGCACCTGCGGCAGCTCGGACCTTTACTTGGTCACGAGGCATGCTGATGTCGTTCCGGTGCGCCG
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GCGGGGCGACAGCAGGGGGAGCCTGCTTTCCCCCAGGCCCATCTCCTACCTGAAGGGCTCCTCGGGTGGACCACTGCTTT
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GCCCTTCGGGGCACGTTGTAGGCATCTTCCGGGCTGCTGTGTGCACCCGGGGGGTTGCGAAGGCGGTGGACTTCATACCC
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GTTGAGTCTATGGAAACTACCATGCGGTCTCCGGTCTTCACAGACAACTCATCCCCTCCGGCCGTACCGCAAACATTCCA
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AGTGGCACATTTACACGCTCCCACTGGCAGCGGCAAGAGCACCAAAGTGCCGGCTGCATATGCAGCCCAAGGGTACAAGG
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TGCTCGTCCTAAACCCGTCCGTTGCCGCCACATTGGGCTTTGGAGCGTATATGTCCAAGGCACATGGCATCGAGCCTAAC
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ATCAGAACTGGGGTAAGGACCATCACCACGGGCGGCCCCATCACGTACTCCACCTATTGCAAGTTCCTTGCCGACGGTGG
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ATGCTCCGGGGGCGCCTATGACATCATAATATGTGATGAATGCCACTCAACTGACTCGACTACCATCTTGGGCATCGGCA
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CAGTCCTGGATCAGGCAGAGACGGCTGGAGCGCGGCTCGTCGTGCTCGCCACCGCCACGCCTCCGGGATCGATCACCGTG
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CCACACCCCAACATCGAGGAAGTGGCCCTGTCCAACACTGGAGAGATTCCCTTCTATGGCAAAGCCATCCCCATTGAGGC
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CATCAAGGGGGGAAGGCATCTCATCTTCTGCCATTCCAAGAAGAAGTGTGACGAGCTCGCCGCAAAGCTGACAGGCCTCG
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GACTCAATGCTGTAGCGTATTACCGGGGTCTCGATGTGTCCGTCATACCGACTAGCGGAGACGTCGTTGTCGTGGCAACA
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GACGCTCTAATGACGGGTTTTACCGGCGACTTTGACTCAGTGATCGACTGCAACACATGTGTCACCCAGACAGTCGATTT
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CAGCTTGGATCCCACCTTCACCATTGAGACGACAACGCTGCCCCAAGACGCGGTGTCGCGTGCGCAGCGGCGAGGTAGGA
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CTGGCAGGGGCAGGAGTGGCATCTACAGGTTTGTGACTCCAGGAGAACGGCCCTCAGGCATGTTCGACTCCTCGGTCCTG
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TGTGAGTGCTATGACGCAGGCTGCGCTTGGTATGAGCTCACGCCCGCTGAGACCTCGGTTAGGTTGCGGGCTTACCTAAA
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TACACCAGGGTTGCCCGTCTGCCAGGACCACCTAGAGTTCTGGGAGAGCGTCTTCACAGGCCTCACCCACATAGATGCCC
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ACTTCTTGTCCCAGACCAAACAGGCAGGAGACAACCTCCCCTACCTGGTAGCATACCAAGCCACAGTGTGCGCCAGGGCT
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CAGGCTCCACCTCCATCGTGGGACCAAATGTGGAAGTGTCTCATACGGCTAAAGCCCACACTGCATGGGCCAACGCCCCT
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GCTGTACAGGCTAGGAGCCGTTCAAAATGAGGTCACTCTCACACACCCCATAACCAAATACATCATGGCATGCATGTCGG
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CTGACCTGGAGGTCGTCACTAGCACCTGGGTGCTAGTAGGCGGAGTCCTTGCGGCTCTGGCCGCGTACTGCCTGACGACA
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GGCAGCGTGGTCATTGTGGGCAGGATCATCTTGTCCGGGAGGCCAGCTGTTATTCCCGACAGGGAAGTCCTCTACCAGGA
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GTTCGATGAGATGGAAGAGTGTGCTTCACACCTCCCTTACATCGAGCAAGGAATGCAGCTCGCCGAGCAATTCAAACAGA
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AGGCGCTCGGATTGCTGCAAACAGCCACCAAGCAAGCGGAGGCTGCTGCTCCCGTGGTGGAGTCCAAGTGGCGAGCCCTT
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GAGGTCTTCTGGGCGAAACACATGTGGAACTTCATCAGCGGGATACAGTACTTGGCAGGCCTATCCACTCTGCCTGGAAA
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CCCCGCGATAGCATCATTGATGGCTTTTACAGCCTCTATCACCAGCCCGCTCACCACCCAAAATACCCTCCTGTTTAACA
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TCTTGGGGGGATGGGTGGCTGCCCAACTCGCTCCCCCCAGCGCTGCTTCGGCTTTCGTGGGCGCCGGCATTGCCGGTGCG
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GCCGTTGGCAGCATAGGTCTCGGGAAGGTACTTGTGGACATTCTGGCGGGCTATGGGGCGGGGGTGGCTGGCGCACTCGT
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GGCCTTTAAGGTCATGAGCGGCGAGATGCCCTCCACTGAGGATCTGGTTAATTTACTCCCTGCCATCCTTTCTCCTGGCG
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CCCTGGTTGTCGGGGTCGTGTGCGCAGCAATACTGCGTCGGCACGTGGGCCCGGGAGAGGGGGCTGTGCAGTGGATGAAC
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CGGCTGATAGCGTTCGCTTCGCGGGGTAACCACGTCTCCCCCACGCACTATGTGCCCGAGAGCGACGCCGCGGCGCGTGT
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TACTCAGATCCTCTCCAGCCTTACCATCACTCAGTTGCTGAAGAGGCTTCATCAGTGGATTAATGAGGACTGCTCCACGC
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CTTGTTCCGGCTCGTGGCTAAAGGATGTTTGGGACTGGATATGCACGGTGTTGAGTGACTTCAAGACTTGGCTCCAGTCC
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AAGCTCCTGCCGCGGTTACCGGGACTCCCTTTCCTGTCATGCCAACGCGGGTACAAGGGAGTCTGGCGGGGGGATGGCAT
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CATGCAAACCACCTGCCCATGTGGAGCACAGATCACCGGACATGTCAAAAATGGCTCCATGAGGATTGTTGGGCCAAAAA
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CCTGCAGCAACACGTGGCATGGAACATTCCCCATCAACGCATACACCACGGGCCCCTGCACGCCCTCCCCAGCGCCGAAC
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TATTCCAGGGCGCTGTGGCGGGTGGCTGCTGAGGAGTACGTGGAGGTTACGCGGGTGGGGGATTTCCACTACGTGACGGG
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CATGACCACTGACAACGTGAAATGCCCATGCCAGGTTCCAGCCCCTGAATTTTTCACGGAGGTGGATGGAGTACGGTTGC
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ACAGGTATGCTCCAGTGTGCAAACCTCTCCTACGAGAGGAGGTCGTATTCCAGGTCGGGCTCAACCAGTACCTGGTCGGG
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TCACAGCTCCCATGTGAGCCCGAACCGGATGTGGCAGTGCTCACTTCCATGCTCACCGACCCCTCTCATATTACAGCAGA
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GACGGCCAAGCGTAGGCTGGCCAGGGGGTCTCCCCCCTCCTTGGCCAGCTCTTCAGCTAGCCAGTTGTCTGCGCCTTCTT
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TGAAGGCGACATGTACTACCCATCATGACTCCCCGGACGCTGACCTCATCGAGGCCAACCTCCTGTGGCGGCAGGAGATG
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GGCGGGAACATCACCCGTGTGGAGTCAGAAAATAAGGTGGTAATCCTGGACTCTTTCGATCCGATTCGGGCGGTGGAGGA
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TGAGAGGGAAATATCCGTCCCGGCGGAGATCCTGCGAAAACCCAGGAAGTTCCCCCCAGCGTTGCCCATATGGGCACGCC
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CGGATTACAACCCTCCACTGCTAGAGTCCTGGAAGGACCCGGACTACGTCCCCCCGGTGGTACACGGGTGCCCTTTGCCA
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TCTACCAAGGCCCCCCCAATACCACCTCCACGGAGGAAGAGGACGGTTGTCCTGACAGAGTCCACCGTGTCTTCTGCCTT
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GGCGGAGCTCGCTACTAAGACCTTTGGCAGCTCCGGGTCGTCGGCCGTTGACAGCGGCACGGCGACTGGCCCTCCCGATC
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AGGCCTCCGACGACGGCGACAAAGGATCCGACGTTGAGTCGTACTCCTCCATGCCCCCCCTCGAGGGAGAGCCAGGGGAC
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CCCGACCTCAGCGACGGGTCTTGGTCTACCGTGAGCGGGGAAGCTGGTGAGGACGTCGTCTGCTGCTCAATGTCCTATAC
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ATGGACAGGTGCCTTGATCACGCCATGCGCTGCGGAGGAGAGCAAGTTGCCCATCAATCCGTTGAGCAACTCTTTGCTGC
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GTCACCACAGTATGGTCTACTCCACAACATCTCGCAGCGCAAGTCTGCGGCAGAAGAAGGTCACCTTTGACAGACTGCAA
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GTCCTGGACGACCACTACCGGGACGTGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCTAGGCTTCTATCTAT
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AGAGGAGGCCTGCAAACTGACGCCCCCACATTCGGCCAAATCCAAATTTGGCTACGGGGCGAAGGACGTCCGGAGCCTAT
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CCAGCAGGGCCGTCAACCACATCCGCTCCGTGTGGGAGGACTTGCTGGAAGACACTGAAACACCAATTGATACCACCATC
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ATGGCAAAAAATGAGGTTTTCTGCGTCCAACCAGAGAAAGGAGGCCGCAAGCCAGCTCGCCTTATCGTATTCCCAGACCT
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GGGGGTACGTGTATGCGAGAAGATGGCCCTTTACGACGTGGTCTCCACCCTTCCTCAGGCCGTGATGGGCCCCTCATACG
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GATTCCAGTACTCTCCTGGGCAGCGGGTCGAGTTCCTGGTGAATACCTGGAAATCAAAGAAATGCCCTATGGGCTTCTCA
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TATGACACCCGCTGCTTTGACTCAACGGTCACTGAGAATGACATCCGTACTGAGGAATCAATTTACCAATGTTGTGACTT
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GGCCCCCGAAGCCAGGCAGGCCATAAGGTCGCTCACAGAGCGGCTTTATGTCGGGGGTCCCCTGACTAATTCGAAGGGGC
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AGAACTGCGGTTATCGCCGGTGCCGCGCAAGTGGCGTGCTGACGACTAGCTGCGGCAACACCCTCACATGTTACTTGAAG
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GCCACTGCGGCCTGTCGAGCTGCAAAGCTCCAGGACTGCACGATGCTCGTGAACGGAGACGACCTTGTCGTTATCTGTGA
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GAGTGCGGGAACCCAGGAGGATGCGGCGGCCCTACGAGCCTTCACGGAGGCTATGACTAGGTATTCCGCCCCCCCCGGGG
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ACCCGCCCCAACCAGAATACGACTTGGAGCTGATAACGTCATGCTCCTCCAATGTGTCGGTCGCGCACGATGCATCCGGC
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AAAAGGGTGTACTACCTCACCCGTGACCCCACCACCCCCCTCGCACGGGCTGCGTGGGAGACAGTTAGACACACTCCAGT
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CAACTCCTGGCTAGGCAATATCATCATGTATGCGCCCACCCTATGGGCGAGGATGATTCTGATGACTCATTTCTTCTCTA
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TCCTTCTAGCTCAGGAGCAACTTGAAAAAGCCCTGGATTGTCAGATCTACGGGGCCTGTTACTCCATTGAGCCACTTGAC
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CTACCTCAGATCATTGAACGACTCCATGGTCTTAGCGCATTTTCACTCCACAGTTACTCTCCAGGTGAGATCAATAGGGT
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GGCTTCATGCCTCAGGAAACTTGGGGTACCGCCTTTGCGAGTCTGGAGACATCGGGCCAGAAGTGTCCGCGCTAAGCTAC
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TGTCCCAGGGGGGGAGGGCTGCCACTTGCGGCAAGTACCTCTTCAACTGGGCAGTAAAGACCAAGCTTAAACTCACTCCA
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ATCCCGGCTGCGTCCCAGCTAGACTTGTCCGGCTGGTTCGTTGCTGGTTACAACGGGGGAGACATATATCACAGCCTGTC
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TCGTGCCCGACCCCGTTGGTTCATGTTGTGCCTACTCCTACTTTCTGTAGGGGTAGGCATCTACCTGCTCCCCAACCGGT
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GAACGGGGAGCTAACCACTCCAGGCCAATAGGCCATTCCCTTTTTTTTTTTTC
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5704
db/HIV1POLDNA.fasta
5704
db/HIV1POLDNA.fasta
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>prot
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PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGI
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GGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
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>3-struct
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----SSS--EEEEEETTEEEEEEE-TT-SS-EE-S----S-EEEEEEEET
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TEEEEEEEE-SEEEEETTEEEEE-EEEE--SS-EE-HHHHTTTT-----
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