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clean: example db

This commit is contained in:
kuoi 2023-04-12 00:24:57 +08:00
parent 8092ada581
commit b307d12174
3 changed files with 0 additions and 5829 deletions
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119
db/HCVCG.fasta
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@ -1,119 +0,0 @@
>gi|9626438|ref|NC_001433.1| Hepatitis C virus, complete genome
TTGGGGGCGACACTCCACCATAGATCACTCCCCTGTGAGGAACTACTGTCTTCACGCAGAAAGCGTCTAGCCATGGCGTT
AGTATGAGTGTTGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCCATAGTGGTCTGCGGAACCGGTGAGTACACCGGA
ATTGCCAGGACGACCGGGTCCTTTCTTGGATCAACCCGCTCAATGCCTGGAGATTTGGGCGTGCCCCCGCGAGACTGCTA
GCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTGCCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGA
CCGTGCATCATGAGCACAAATCCTAAACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTTAAGTT
CCCGGGCGGTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGTGCGCGCGACTAGGA
AGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCCCAAGGCTCGCCGGCCCGAGGGTAGGACCTGGGCT
CAGCCCGGGTACCCTTGGCCCCTCTATGGCAACGAGGGTATGGGGTGGGCAGGATGGCTCCTGTCACCCCGTGGCTCTCG
GCCTAGTTGGGGCCCCACAGACCCCCGGCGTAGGTCGCGTAATTTGGGTAAGGTCATCGATACCCTTACATGCGGCTTCG
CCGACCTCATGGGGTACATTCCGCTTGTCGGCGCCCCCCTAGGGGGCGCTGCCAGGGCCCTGGCACATGGTGTCCGGGTT
CTGGAGGACGGCGTGAACTATGCAACAGGGAATCTGCCCGGTTGCTCTTTCTCTATCTTCCTCTTAGCTTTGCTGTCTTG
TTTGACCATCCCAGCTTCCGCTTACGAGGTGCGCAACGTGTCCGGGATATACCATGTCACGAACGACTGCTCCAACTCAA
GTATTGTGTATGAGGCAGCGGACATGATCATGCACACCCCCGGGTGCGTGCCCTGCGTCCGGGAGAGTAATTTCTCCCGT
TGCTGGGTAGCGCTCACTCCCACGCTCGCGGCCAGGAACAGCAGCATCCCCACCACGACAATACGACGCCACGTCGATTT
GCTCGTTGGGGCGGCTGCTCTCTGTTCCGCTATGTACGTTGGGGATCTCTGCGGATCCGTTTTTCTCGTCTCCCAGCTGT
TCACCTTCTCACCTCGCCGGTATGAGACGGTACAAGATTGCAATTGCTCAATCTATCCCGGCCACGTATCAGGTCACCGC
ATGGCTTGGGATATGATGATGAACTGGTCACCTACAACGGCCCTAGTGGTATCGCAGCTACTCCGGATCCCACAAGCCGT
CGTGGACATGGTGGCGGGGGCCCACTGGGGTGTCCTAGCGGGCCTTGCCTACTATTCCATGGTGGGGAACTGGGCTAAGG
TCTTGATTGTGATGCTACTCTTTGCTGGCGTTGACGGGCACACCCACGTGACAGGGGGAAGGGTAGCCTCCAGCACCCAG
AGCCTCGTGTCCTGGCTCTCACAAGGCCCATCTCAGAAAATCCAACTCGTGAACACCAACGGCAGCTGGCACATCAACAG
GACCGCTCTGAATTGCAATGACTCCCTCCAAACTGGGTTCATTGCTGCGCTGTTCTACGCACACAGGTTCAACGCGTCCG
GGTGCCCAGAGCGCATGGCTAGCTGCCGCCCCATCGATGAGTTCGCTCAGGGGTGGGGTCCCATCACTCATGATATGCCT
GAGAGCTCGGACCAGAGGCCATATTGCTGGCACTACGCGCCTCGACCGTGCGGGATCGTGCCTGCGTCGCAGGTGTGTGG
TCCAGTGTATTGCTTCACTCCGAGCCCTGTTGTAGTGGGGACGACCGATCGTTTCGGCGCTCCTACGTATAGCTGGGGGG
AGAATGAGACAGACGTGCTGCTACTTAGCAACACGCGGCCGCCTCAAGGCAACTGGTTTGGGTGCACGTGGATGAACAGC
ACTGGGTTCACCAAGACGTGCGGGGGCCCTCCGTGCAACATCGGGGGGGTCGGCAACAACACCTTGGTCTGCCCCACGGA
TTGCTTCCGGAAGCACCCCGAGGCCACTTACACAAAGTGTGGCTCGGGGCCCTGGTTGACACCCAGGTGCATGGTTGACT
ACCCATACAGGCTCTGGCACTACCCCTGCACTGTTAACTTTACCGTCTTTAAGGTCAGGATGTATGTGGGGGGCGTGGAG
CACAGGCTCAATGCTGCATGCAATTGGACTCGAGGAGAGCGCTGTGACTTGGAGGACAGGGATAGGTCAGAACTCAGCCC
GCTGCTGCTGTCTACAACAGAGTGGCAGATACTGCCCTGTTCCTTCACCACCCTACCGGCCCTGTCCACTGGCTTGATCC
ATCTTCACCGGAACATCGTGGACGTGCAATACCTGTACGGTATAGGGTCGGCAGTTGTCTCCTTTGCAATCAAATGGGAG
TATATCCTGTTGCTTTTCCTTCTTCTGGCGGACGCGCGCGTCTGTGCCTGCTTGTGGATGATGCTGCTGATAGCCCAGGC
TGAGGCCACCTTAGAGAACCTGGTGGTCCTCAATGCGGCGTCTGTGGCCGGAGCGCATGGCCTTCTCTCCTTCCTCGTGT
TCTTCTGCGCCGCCTGGTACATCAAAGGCAGGCTGGTCCCTGGGGCGGCATATGCTCTCTATGGCGTATGGCCGTTGCTC
CTGCTCTTGCTGGCCTTACCACCACGAGCTTATGCCATGGACCGAGAGATGGCTGCATCGTGCGGAGGCGCGGTTTTTGT
AGGTCTGGTACTCTTGACCTTGTCACCATACTATAAGGTGTTCCTCGCTAGGCTCATATGGTGGTTACAATATTTTATCA
CCAGAGCCGAGGCGCACTTGCAAGTGTGGGTCCCCCCTCTCAATGTTCGGGGAGGCCGCGATGCCATCATCCTCCTTACA
TGCGCGGTCCATCCAGAGCTAATCTTTGACATCACCAAACTCCTGCTCGCCATACTCGGTCCGCTCATGGTGCTCCAGGC
TGGCATAACTAGAGTGCCGTACTTTGTACGCGCTCAGGGGCTCATCCGTGCATGCATGTTAGTGCGGAAGGTCGCTGGAG
GCCACTATGTCCAAATGGCCTTCATGAAGCTGGCCGCGCTGACAGGTACGTACGTATATGACCATCTTACTCCACTGCGG
GATTGGGCCCACGCGGGCCTACGAGACCTTGCGGTGGCAGTAGAGCCCGTCGTCTTCTCTGACATGGAGACTAAACTCAT
CACCTGGGGGGCAGACACCGCGGCGTGTGGGGACATCATCTCGGGTCTACCAGTCTCCGCCCGAAGGGGGAAGGAGATAC
TTCTAGGACCGGCCGATAGTTTTGGAGAGCAGGGGTGGCGGCTCCTTGCGCCTATCACGGCCTATTCCCAACAAACGCGG
GGCCTGCTTGGCTGTATCATCACTAGCCTCACAGGTCGGGACAAGAACCAGGTCGATGGGGAGGTTCAGGTGCTCTCCAC
CGCAACGCAATCTTTCCTGGCGACCTGCGTCAATGGCGTGTGTTGGACCGTCTACCATGGTGCCGGCTCGAAGACCCTGG
CCGGCCCGAAGGGTCCAATCACCCAAATGTACACCAATGTAGACCAGGACCTCGTCGGCTGGCCGGCGCCCCCCGGGGCG
CGCTCCATGACACCGTGCACCTGCGGCAGCTCGGACCTTTACTTGGTCACGAGGCATGCTGATGTCGTTCCGGTGCGCCG
GCGGGGCGACAGCAGGGGGAGCCTGCTTTCCCCCAGGCCCATCTCCTACCTGAAGGGCTCCTCGGGTGGACCACTGCTTT
GCCCTTCGGGGCACGTTGTAGGCATCTTCCGGGCTGCTGTGTGCACCCGGGGGGTTGCGAAGGCGGTGGACTTCATACCC
GTTGAGTCTATGGAAACTACCATGCGGTCTCCGGTCTTCACAGACAACTCATCCCCTCCGGCCGTACCGCAAACATTCCA
AGTGGCACATTTACACGCTCCCACTGGCAGCGGCAAGAGCACCAAAGTGCCGGCTGCATATGCAGCCCAAGGGTACAAGG
TGCTCGTCCTAAACCCGTCCGTTGCCGCCACATTGGGCTTTGGAGCGTATATGTCCAAGGCACATGGCATCGAGCCTAAC
ATCAGAACTGGGGTAAGGACCATCACCACGGGCGGCCCCATCACGTACTCCACCTATTGCAAGTTCCTTGCCGACGGTGG
ATGCTCCGGGGGCGCCTATGACATCATAATATGTGATGAATGCCACTCAACTGACTCGACTACCATCTTGGGCATCGGCA
CAGTCCTGGATCAGGCAGAGACGGCTGGAGCGCGGCTCGTCGTGCTCGCCACCGCCACGCCTCCGGGATCGATCACCGTG
CCACACCCCAACATCGAGGAAGTGGCCCTGTCCAACACTGGAGAGATTCCCTTCTATGGCAAAGCCATCCCCATTGAGGC
CATCAAGGGGGGAAGGCATCTCATCTTCTGCCATTCCAAGAAGAAGTGTGACGAGCTCGCCGCAAAGCTGACAGGCCTCG
GACTCAATGCTGTAGCGTATTACCGGGGTCTCGATGTGTCCGTCATACCGACTAGCGGAGACGTCGTTGTCGTGGCAACA
GACGCTCTAATGACGGGTTTTACCGGCGACTTTGACTCAGTGATCGACTGCAACACATGTGTCACCCAGACAGTCGATTT
CAGCTTGGATCCCACCTTCACCATTGAGACGACAACGCTGCCCCAAGACGCGGTGTCGCGTGCGCAGCGGCGAGGTAGGA
CTGGCAGGGGCAGGAGTGGCATCTACAGGTTTGTGACTCCAGGAGAACGGCCCTCAGGCATGTTCGACTCCTCGGTCCTG
TGTGAGTGCTATGACGCAGGCTGCGCTTGGTATGAGCTCACGCCCGCTGAGACCTCGGTTAGGTTGCGGGCTTACCTAAA
TACACCAGGGTTGCCCGTCTGCCAGGACCACCTAGAGTTCTGGGAGAGCGTCTTCACAGGCCTCACCCACATAGATGCCC
ACTTCTTGTCCCAGACCAAACAGGCAGGAGACAACCTCCCCTACCTGGTAGCATACCAAGCCACAGTGTGCGCCAGGGCT
CAGGCTCCACCTCCATCGTGGGACCAAATGTGGAAGTGTCTCATACGGCTAAAGCCCACACTGCATGGGCCAACGCCCCT
GCTGTACAGGCTAGGAGCCGTTCAAAATGAGGTCACTCTCACACACCCCATAACCAAATACATCATGGCATGCATGTCGG
CTGACCTGGAGGTCGTCACTAGCACCTGGGTGCTAGTAGGCGGAGTCCTTGCGGCTCTGGCCGCGTACTGCCTGACGACA
GGCAGCGTGGTCATTGTGGGCAGGATCATCTTGTCCGGGAGGCCAGCTGTTATTCCCGACAGGGAAGTCCTCTACCAGGA
GTTCGATGAGATGGAAGAGTGTGCTTCACACCTCCCTTACATCGAGCAAGGAATGCAGCTCGCCGAGCAATTCAAACAGA
AGGCGCTCGGATTGCTGCAAACAGCCACCAAGCAAGCGGAGGCTGCTGCTCCCGTGGTGGAGTCCAAGTGGCGAGCCCTT
GAGGTCTTCTGGGCGAAACACATGTGGAACTTCATCAGCGGGATACAGTACTTGGCAGGCCTATCCACTCTGCCTGGAAA
CCCCGCGATAGCATCATTGATGGCTTTTACAGCCTCTATCACCAGCCCGCTCACCACCCAAAATACCCTCCTGTTTAACA
TCTTGGGGGGATGGGTGGCTGCCCAACTCGCTCCCCCCAGCGCTGCTTCGGCTTTCGTGGGCGCCGGCATTGCCGGTGCG
GCCGTTGGCAGCATAGGTCTCGGGAAGGTACTTGTGGACATTCTGGCGGGCTATGGGGCGGGGGTGGCTGGCGCACTCGT
GGCCTTTAAGGTCATGAGCGGCGAGATGCCCTCCACTGAGGATCTGGTTAATTTACTCCCTGCCATCCTTTCTCCTGGCG
CCCTGGTTGTCGGGGTCGTGTGCGCAGCAATACTGCGTCGGCACGTGGGCCCGGGAGAGGGGGCTGTGCAGTGGATGAAC
CGGCTGATAGCGTTCGCTTCGCGGGGTAACCACGTCTCCCCCACGCACTATGTGCCCGAGAGCGACGCCGCGGCGCGTGT
TACTCAGATCCTCTCCAGCCTTACCATCACTCAGTTGCTGAAGAGGCTTCATCAGTGGATTAATGAGGACTGCTCCACGC
CTTGTTCCGGCTCGTGGCTAAAGGATGTTTGGGACTGGATATGCACGGTGTTGAGTGACTTCAAGACTTGGCTCCAGTCC
AAGCTCCTGCCGCGGTTACCGGGACTCCCTTTCCTGTCATGCCAACGCGGGTACAAGGGAGTCTGGCGGGGGGATGGCAT
CATGCAAACCACCTGCCCATGTGGAGCACAGATCACCGGACATGTCAAAAATGGCTCCATGAGGATTGTTGGGCCAAAAA
CCTGCAGCAACACGTGGCATGGAACATTCCCCATCAACGCATACACCACGGGCCCCTGCACGCCCTCCCCAGCGCCGAAC
TATTCCAGGGCGCTGTGGCGGGTGGCTGCTGAGGAGTACGTGGAGGTTACGCGGGTGGGGGATTTCCACTACGTGACGGG
CATGACCACTGACAACGTGAAATGCCCATGCCAGGTTCCAGCCCCTGAATTTTTCACGGAGGTGGATGGAGTACGGTTGC
ACAGGTATGCTCCAGTGTGCAAACCTCTCCTACGAGAGGAGGTCGTATTCCAGGTCGGGCTCAACCAGTACCTGGTCGGG
TCACAGCTCCCATGTGAGCCCGAACCGGATGTGGCAGTGCTCACTTCCATGCTCACCGACCCCTCTCATATTACAGCAGA
GACGGCCAAGCGTAGGCTGGCCAGGGGGTCTCCCCCCTCCTTGGCCAGCTCTTCAGCTAGCCAGTTGTCTGCGCCTTCTT
TGAAGGCGACATGTACTACCCATCATGACTCCCCGGACGCTGACCTCATCGAGGCCAACCTCCTGTGGCGGCAGGAGATG
GGCGGGAACATCACCCGTGTGGAGTCAGAAAATAAGGTGGTAATCCTGGACTCTTTCGATCCGATTCGGGCGGTGGAGGA
TGAGAGGGAAATATCCGTCCCGGCGGAGATCCTGCGAAAACCCAGGAAGTTCCCCCCAGCGTTGCCCATATGGGCACGCC
CGGATTACAACCCTCCACTGCTAGAGTCCTGGAAGGACCCGGACTACGTCCCCCCGGTGGTACACGGGTGCCCTTTGCCA
TCTACCAAGGCCCCCCCAATACCACCTCCACGGAGGAAGAGGACGGTTGTCCTGACAGAGTCCACCGTGTCTTCTGCCTT
GGCGGAGCTCGCTACTAAGACCTTTGGCAGCTCCGGGTCGTCGGCCGTTGACAGCGGCACGGCGACTGGCCCTCCCGATC
AGGCCTCCGACGACGGCGACAAAGGATCCGACGTTGAGTCGTACTCCTCCATGCCCCCCCTCGAGGGAGAGCCAGGGGAC
CCCGACCTCAGCGACGGGTCTTGGTCTACCGTGAGCGGGGAAGCTGGTGAGGACGTCGTCTGCTGCTCAATGTCCTATAC
ATGGACAGGTGCCTTGATCACGCCATGCGCTGCGGAGGAGAGCAAGTTGCCCATCAATCCGTTGAGCAACTCTTTGCTGC
GTCACCACAGTATGGTCTACTCCACAACATCTCGCAGCGCAAGTCTGCGGCAGAAGAAGGTCACCTTTGACAGACTGCAA
GTCCTGGACGACCACTACCGGGACGTGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCTAGGCTTCTATCTAT
AGAGGAGGCCTGCAAACTGACGCCCCCACATTCGGCCAAATCCAAATTTGGCTACGGGGCGAAGGACGTCCGGAGCCTAT
CCAGCAGGGCCGTCAACCACATCCGCTCCGTGTGGGAGGACTTGCTGGAAGACACTGAAACACCAATTGATACCACCATC
ATGGCAAAAAATGAGGTTTTCTGCGTCCAACCAGAGAAAGGAGGCCGCAAGCCAGCTCGCCTTATCGTATTCCCAGACCT
GGGGGTACGTGTATGCGAGAAGATGGCCCTTTACGACGTGGTCTCCACCCTTCCTCAGGCCGTGATGGGCCCCTCATACG
GATTCCAGTACTCTCCTGGGCAGCGGGTCGAGTTCCTGGTGAATACCTGGAAATCAAAGAAATGCCCTATGGGCTTCTCA
TATGACACCCGCTGCTTTGACTCAACGGTCACTGAGAATGACATCCGTACTGAGGAATCAATTTACCAATGTTGTGACTT
GGCCCCCGAAGCCAGGCAGGCCATAAGGTCGCTCACAGAGCGGCTTTATGTCGGGGGTCCCCTGACTAATTCGAAGGGGC
AGAACTGCGGTTATCGCCGGTGCCGCGCAAGTGGCGTGCTGACGACTAGCTGCGGCAACACCCTCACATGTTACTTGAAG
GCCACTGCGGCCTGTCGAGCTGCAAAGCTCCAGGACTGCACGATGCTCGTGAACGGAGACGACCTTGTCGTTATCTGTGA
GAGTGCGGGAACCCAGGAGGATGCGGCGGCCCTACGAGCCTTCACGGAGGCTATGACTAGGTATTCCGCCCCCCCCGGGG
ACCCGCCCCAACCAGAATACGACTTGGAGCTGATAACGTCATGCTCCTCCAATGTGTCGGTCGCGCACGATGCATCCGGC
AAAAGGGTGTACTACCTCACCCGTGACCCCACCACCCCCCTCGCACGGGCTGCGTGGGAGACAGTTAGACACACTCCAGT
CAACTCCTGGCTAGGCAATATCATCATGTATGCGCCCACCCTATGGGCGAGGATGATTCTGATGACTCATTTCTTCTCTA
TCCTTCTAGCTCAGGAGCAACTTGAAAAAGCCCTGGATTGTCAGATCTACGGGGCCTGTTACTCCATTGAGCCACTTGAC
CTACCTCAGATCATTGAACGACTCCATGGTCTTAGCGCATTTTCACTCCACAGTTACTCTCCAGGTGAGATCAATAGGGT
GGCTTCATGCCTCAGGAAACTTGGGGTACCGCCTTTGCGAGTCTGGAGACATCGGGCCAGAAGTGTCCGCGCTAAGCTAC
TGTCCCAGGGGGGGAGGGCTGCCACTTGCGGCAAGTACCTCTTCAACTGGGCAGTAAAGACCAAGCTTAAACTCACTCCA
ATCCCGGCTGCGTCCCAGCTAGACTTGTCCGGCTGGTTCGTTGCTGGTTACAACGGGGGAGACATATATCACAGCCTGTC
TCGTGCCCGACCCCGTTGGTTCATGTTGTGCCTACTCCTACTTTCTGTAGGGGTAGGCATCTACCTGCTCCCCAACCGGT
GAACGGGGAGCTAACCACTCCAGGCCAATAGGCCATTCCCTTTTTTTTTTTTC

5704
db/HIV1POLDNA.fasta
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6
db/structprot.fasta
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>prot
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGI
GGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
>3-struct
----SSS--EEEEEETTEEEEEEE-TT-SS-EE-S----S-EEEEEEEET
TEEEEEEEE-SEEEEETTEEEEE-EEEE--SS-EE-HHHHTTTT-----