45 lines
2 KiB
Text
45 lines
2 KiB
Text
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21 January 2001 Tulio de Oliveira & Rob Miller
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tuliodna@yahoo.com, rob@inpharmatica.co.uk
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This is veresion 2.2 of GDE which I have attempted to port to
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Linux (glibc, kernel 2.0.x, Debian release but no .deb file).
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the basic installation steps are as follows:
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(1) get the OpenWin XView libraries and include files set up on
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your system. Binary versions of the libs are included in this
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distribution, but they may not work on your system. If they
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will work, you should be able to copy them to /usr/local/lib,
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run ldconfig, and have the included executable GDE files work.
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Use "ldconfig -v | grep libxv" to see if it's really finding the
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shared library, else "man ldconfig" and sort it out. It's
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better if you get the xview stuff properly installed on your
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system, but if you can't just grab the precompiled executables
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from the various subdirectories -- i.e., skip step (2) below.
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Rpm version of OpenView (Xview) library are included in the distribution at
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the CORE directory.
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xview-3.2p1.4-6.i386.rpm , xview-3.2p1.4-6.src.rpm , xview-clients-3.2p1.4-6.i386.rpm , xview-devel-3.2p1.4-6.i386.rpm
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For Redhat system: rpm -i xview-xxxx.rpm
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(2) The linux distribution had been compiled and provide the executables files. Until today GDE for linux had been sucessfull setup in Debian, RedHat, Mandrake and FreeBSD Linux distributions.
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(3) copy all the executables to wherever you want GDE to live,
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and set the environment variable GDE_HELP_DIR to that location
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in your login/startup files. Mine uses bash and in the
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~/.bash_profile file I have
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export GDE_HELP_DIR=/usr/local/GDE
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M. Zuker's RNA folding code requires that there be a
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$GDE_HELP_DIR/ZUKER directory containing the ZUKER/*.dat
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files. You will probably want to put the $GDE_HELP_DIR
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on your path if it is a new directory.
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That should be it. I have gotten everythng to compile though
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still with a few warnings here and there that I couldn't figure
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out. I think everything runs ok as well, though I'm not certain
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about how Zuker's MFOLD is exactly supposed to work.
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