33 lines
753 B
Text
33 lines
753 B
Text
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item:MFOLD
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itemmethod:shelltool (tr 'a-z' 'A-Z' < seqGB > .GDE.tmp.caps; ZUKERGDE.sh .GDE.tmp.caps $CT $GDE_HELP_DIR/ZUKER/ > out1 && $METHOD < out1; Zuk_to_gen < $CT >file.gen; gde file.gen& textedit RegionTable; /bin/rm -f RegionTable out1 seqGB* .GDE.tmp.caps)&itemhelp:MFOLD.help
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in:seqGB
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informat:genbank
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insave:
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arg:METHOD
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argtype:chooser
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arglabel:RNA type
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argchoice:Fold Linear RNA:lrna
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argchoice:Fold Circular RNA:crna
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arg:CT
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argtype:text
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arglabel:ct File Name
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argtext:ctFile
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item:Draw Secondary structure
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itemmethod:(LoopTool $TEMPLATE in1 ; /bin/rm -f in1) &
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itemhelp:LoopTool.help
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arg:TEMPLATE
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argtype:chooser
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arglabel:Use template file ./loop.temp?
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argchoice:No:
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argchoice:Yes:-t loop.temp
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in:in1
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informat:genbank
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insave:
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