75 lines
3.9 KiB
Text
75 lines
3.9 KiB
Text
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MFOLD
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Flow chart for RNA folding - main
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---------------------------------
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-----> call device ------------.
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^ | |
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| | read energy files
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^ (cont run) | |
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| | (reg) (save)
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^ call cdump--. | |
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| call outputs |
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^ | '--------- call menu
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| |-----------------------' **
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^ | |
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| mrep = 1 --(multiple)-- read MREPth sequence
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err msg | |
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^ zero bit arrays <---------------'
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| call process
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(n*2.gt.fldmax)----------'
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----(n ok)-----
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(save or reg run) (cont run)
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call fill--(reg)-->|
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putcont<-----(save run) |
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stop. rep = 1
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jump = 1
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flag = .true.
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|<------ *
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(mult or n best)----------------(plot run)
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sortout(rep) (jump.eq.1) (jump.eq.2)
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(err) (no err) dotplt(start) dotplt(cross-hairs)
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| | '-> jump = 2 <-'
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error message->rep++ |
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mrep++ |
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/ \ |
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(reps done) (more to go) |
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flag = .false.------------------------------->(not flag)->.
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(flag) |
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<----(err) <---trace1 |
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errmsg (no err) |
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-----------------|------->(not flag)->|
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(flag) |
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trace2 |
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<----(err) <---' | |
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errmsg (no err) |
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'-----------------|------->(not flag)->|
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calculate energy |
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(plot or n-best) (mult) |
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mark basepairs | |
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'-- call selected outputs |
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|<-----------'
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------------------
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(plot or n-best) (mult)------
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(flag) (not flag) (done) (not done)
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goto * '-> stop <-' goto **
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