13 lines
368 B
Text
13 lines
368 B
Text
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FREE ENERGY BY SIZE OF LOOP
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misc. loop functions
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> internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30)
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1.079
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asymmetric internal loops: the ninio equation
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> the maximum correction
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3.0
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> the f(m) array (see ninio for details)
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.4 .3 .2 .1
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multibranched loops
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> offset, free base penalty, helix penalty
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4.6 .4 .1
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