From 945ba6882b4da21ba0839581ae86d25b59a98c4c Mon Sep 17 00:00:00 2001
From: Kuoi <kuoi@bioarchlinux.org>
Date: Sun, 14 Jan 2024 23:05:59 +0800
Subject: [PATCH] add: standard run script based on guoyi.run

---
 3tnt.sh | 54 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 54 insertions(+)
 create mode 100755 3tnt.sh

diff --git a/3tnt.sh b/3tnt.sh
new file mode 100755
index 0000000..bc05200
--- /dev/null
+++ b/3tnt.sh
@@ -0,0 +1,54 @@
+#!/bin/bash
+
+# Found TNT
+
+if [ -z "tnt" ]; then
+    echo "TNT not found"
+    exit 1
+fi
+
+# Define input data
+
+input_file=$1
+
+if [ -z "$input_file" ]; then
+    echo "Usage: $0 <input_file> <guoyi.run>"
+    exit 1
+fi
+
+# Define tnt script
+
+script_file=$2
+
+if [ -z "$script_file" ]; then
+    echo "Usage: $0 <input_file> <guoyi.run>"
+    echo "Warning: guoyi.run will be set as /usr/share/tnt/tnt_scripts/guoyi.run"
+    script_file="/usr/share/tnt/tnt_scripts/guoyi.run"
+fi
+
+
+# Define three weighting functions
+task1() {
+    echo "Equal Weighting started"
+    tnt run $script_file $input_file 3 ew 0 str 5 EW,
+    echo "Equal Weighting completed"
+}
+
+task2() {
+    echo "Implied Weighting started"
+    tnt run $script_file $input_file 3 iw 12 str 5 IW,
+    echo "Implied Weighting completed"
+}
+
+task3() {
+    echo "Extended Implied Weighting started"
+    tnt run $script_file $input_file 3 eiw 12 str 5 EIW,
+    echo "Extended Implied Weighting completed"
+}
+
+task1 
+task2
+task3 
+
+echo "All tasks completed"
+