diff --git a/guoyi.run b/guoyi.run index 927ed47..e16b847 100644 --- a/guoyi.run +++ b/guoyi.run @@ -113,16 +113,32 @@ tsave *= trees.tnt.tre; /*Consensus tree*/ bbreak=tbr; nelsen *; -tchoose/; /*Export consensus tree*/ +tchoose/; export - original.tre; taxname-; export - original_no.tre; -taxname=; tsave = original.ctf; tsave *= original.tnt.tre; +/*Apomorphic characters*/ +tchoose/; +export = winclada.tre; +taxname =; +ttags=; +apo >0; +quote - /----------------------------------------------\; +quote - apomorphy tags start ; +ttags/; +quote - apomorphy tags stop ; +quote - \----------------------------------------------/; +ttags & apo.svg thickness 7 italics fontsize 15; +export < apo.tre; +taxname-; +export - apo_no.tre; +ttags-; + /*Get Bremer/jak/boot support*/ tchoose/; ttags=; @@ -148,22 +164,6 @@ quote - \----------------------------------------------/; export < resample.tre; taxname-; export - resample_no.tre; - -/*Apomorphic characters*/ -export = winclada.tre; -taxname =; -ttags-; -ttags=; -apo >0; -quote - /----------------------------------------------\; -quote - apomorphy tags start ; -ttags/; -quote - apomorphy tags stop ; -quote - \----------------------------------------------/; -ttags & apo.svg thickness 7 italics fontsize 15; -export < apo.tre; -taxname-; -export - apo_no.tre; ttags-; /*Caulculate TL/CI/RI score*/ @@ -205,7 +205,7 @@ quote - | consensus tree with support |; quote - | The file `apo*.tre` contain |; quote - | tree with apomorphic character |; quote - | The file `*_no.tre` contain |; -quote - | tree with `taxaname-` |; +quote - | tree with `taxname-` |; quote - | The file `*.ctf` tree file is |; quote - | only readable for TNT |; quote - | The file `*.tnt.tre` contain |;