尝试输出到nex

This commit is contained in:
qaqland 2022-01-03 12:38:07 +08:00
parent 9f1bd76e27
commit fdd99fbb04
3 changed files with 55 additions and 9 deletions

3
go.mod Normal file
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@ -0,0 +1,3 @@
module gocomb
go 1.17

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@ -3,27 +3,54 @@ package main
import (
"flag"
"fmt"
"gocomb/src"
"io/ioutil"
"os"
"text/template"
)
type Person struct {
Name string
DNA string
}
func main() {
file_flag := flag.String("o", "a.ast", "files name wait to out")
file_flag := flag.String("o", "a.nex", "files name wait to out")
// 这里一定要是指针样子
flag.Parse()
file_names := flag.Args() // []string{"foo", "bar"}
// file_out := ""
fmt.Println("输出在这里", *file_flag)
nex_tmpl, err := template.New("nex").Parse(nex_tmpl.Nex_tmpl)
if err != nil {
panic("tmpl err")
}
new_file, err := os.OpenFile("a.nex", os.O_CREATE|os.O_RDWR, 0666)
if err != nil {
fmt.Println("open file error :", err)
return
}
defer new_file.Close()
for _, v := range file_names {
// fmt.Println(k, v)
read(v)
new_nex := read(v)
err := nex_tmpl.Execute(new_file, new_nex)
if err != nil {
fmt.Println("err at tmpl exec", err)
}
}
}
func read(file_name string) {
func read(file_name string) map[string]string {
f, err := ioutil.ReadFile("./" + file_name)
if err != nil {
fmt.Println(err)
return
return nil
}
// fmt.Println(f)
@ -55,8 +82,9 @@ func read(file_name string) {
}
}
}
for k1, v1 := range seq {
fmt.Println(k1)
fmt.Println(v1)
}
// for k1, v1 := range seq {
// fmt.Println(k1)
// fmt.Println(v1)
// }
return seq
}

15
src/nex_tmpl.go Normal file
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@ -0,0 +1,15 @@
package nex_tmpl
const Nex_tmpl = `#NEXUS
BEGIN DATA;
DIMENSIONS NTAX={} NCHAR={};
FORMAT DATATYPE=DNA GAP=- MISSING=? ; #DATATYPE={}
MATRIX{{ range $k, $v := . }}
'{{ $k }}' {{ $v }}{{ end }}
;
END;
BEGIN SETS;
CHARSET 16S = 1-811;
CHARSET CO1 = 812-1421;
END;
`