malacology/SeqCombGo
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已修复 tmpl

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This commit is contained in:
qaqland 2022-01-04 13:55:05 +08:00
parent cf7dfccc77
commit 20c23128ee
2 changed files with 26 additions and 24 deletions
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29
parser.go
View file

@ -16,16 +16,16 @@ type dna struct {
}
type charset struct {
name string
from int
to int
Name string
From int
To int
}
type tmpl_data struct {
ntax int
nchar int
matrix map[string]string
charset []charset
Ntax int
Nchar int
Matrix map[string]string
Charset []charset
}
func main() {
@ -34,7 +34,7 @@ func main() {
file_export := flag.String("o", "a.nex", "files name wait to out")
flag.Parse()
file_names := flag.Args() // []string{"foo", "bar"}
fmt.Println("export here", *file_export)
fmt.Println("[ export here ]", *file_export)
// 遍历文件
sum_nex := make([]dna, 0, 5)
@ -42,7 +42,7 @@ func main() {
i, j := fas_parser.Fas_parser(v)
new_nex := dna{v, i, j}
sum_nex = append(sum_nex, new_nex)
fmt.Println("working", k+1, v)
fmt.Println("[ working ]", k+1, v)
}
// 整合若干文件的统计
@ -51,7 +51,7 @@ func main() {
n := v.name
f := 1
if k != 0 {
f = sum_charset[k-1].to
f = sum_charset[k-1].To
}
t := f + v.count
new_charset := charset{n, f, t}
@ -61,8 +61,8 @@ func main() {
// dna 的整合
seq := sum_nex[0].min_dna
ntax := 0
nchar := sum_charset[len(sum_charset)-1].to
ntax := 0 // 待修补
nchar := sum_charset[len(sum_charset)-1].To
for k, v := range sum_nex {
if k == 0 {
continue
@ -87,7 +87,7 @@ func main() {
}
// 覆盖创建要写入的 nex 文件
new_file, err := os.OpenFile(*file_export, os.O_CREATE|os.O_RDWR, 0666)
new_file, err := os.OpenFile(*file_export, os.O_WRONLY|os.O_TRUNC|os.O_CREATE, 0666)
if err != nil {
fmt.Println("[ create or open file error ]", err)
return
@ -95,7 +95,8 @@ func main() {
defer new_file.Close()
// 写入 nex 模板
if nex_tmpl.Execute(new_file, last_data) != nil {
err = nex_tmpl.Execute(new_file, last_data)
if err!= nil {
fmt.Println("[ err at tmpl exec ]", err)
return
}

21
src/nex_tmpl.go
View file

@ -2,14 +2,15 @@ package fas_parser
const Nex_tmpl = `#NEXUS
BEGIN DATA;
DIMENSIONS NTAX={{ .ntax }} NCHAR={{ .nchar }};
FORMAT DATATYPE=DNA GAP=- MISSING=? ; #DATATYPE={}`
DIMENSIONS NTAX={{ .Ntax }} NCHAR={{ .Nchar }};
FORMAT DATATYPE=DNA GAP=- MISSING=? ; #DATATYPE={}
MATRIX{{ range $k, $v := .Matrix }}
'{{ $k }}' {{ $v }}{{ end }}
;
END;
BEGIN SETS;{{ range $_, $i := .Charset }}
CHARSET {{ .Name }} = {{ .From }}-{{ .To }};{{ end }}
END;
`
// MATRIX{{ range $k, $v := .matrix }}
// '{{ $k }}' {{ $v }}{{ end }}
// ;
// END;`
// BEGIN SETS;{{ range $_, $i := .charset }}
// CHARSET {{ .name }} = {{ .from }}-{{ .to }};{{ end }}
// END;
// `
// 最后那个 $i 好像有问题