fastp = /usr/bin/fastp spades = /usr/bin/spades.py diamond = /usr/bin/diamond sortdiamond = /usr/bin/sortdiamond bowtie2 = /usr/bin/bowtie2 samtools = /usr/bin/samtools bcftools = /usr/bin/bcftools exonerate = /usr/bin/exonerate macse = /usr/share/java/macse.jar delstop = /usr/bin/delstop trimal = /usr/bin/trimal