malacology/RGBEPP
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fix: align array issue

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kuoi 2024-07-03 12:54:51 +10:00
parent 3fbb8b0d98
commit d06242d91f
1 changed files with 1 additions and 1 deletions
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RGBEPP.sh
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@ -255,7 +255,7 @@ if [ "$ARG_F" = "all" ] || [ "$ARG_F" = "align" ]; then
cd $DirMerge cd $DirMerge
for (( i=0; i<$length_gn; i++ )) for (( i=0; i<$length_gn; i++ ))
do do
java -jar $PathMacse -prog alignSequences -seq ${genes}.fasta -out_AA ../$DirAlign/AA/$genes.fasta -out_NT ../$DirAlign/NT/$genes.fasta java -jar $PathMacse -prog alignSequences -seq ${genes[$i]}.fasta -out_AA ../$DirAlign/AA/${genes[$i]}.fasta -out_NT ../$DirAlign/NT/${genes[$i]}.fasta
done done
cd - cd -