malacology/RGBEPP
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polish: convert fasta

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This commit is contained in:
kuoi 2024-09-12 15:07:23 +10:00
parent 2968698cda
commit 7729c2e6ff
1 changed files with 2 additions and 2 deletions
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4
RGBEPP.d
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@ -298,7 +298,7 @@ void processCombFasta(string[] ARG_G, string[] ARG_L, string DirConsensus) {
writeln("ConvertFasta::Start"); writeln("ConvertFasta::Start");
// read first // read first
foreach (file; ARG_L) { foreach (file; parallel(ARG_L,1)) {
string inputFile = DirConTaxa ~ "/" ~ file ~ ".fasta"; string inputFile = DirConTaxa ~ "/" ~ file ~ ".fasta";
if (!exists(inputFile)) { if (!exists(inputFile)) {
writeln("File not found: ", inputFile); writeln("File not found: ", inputFile);
@ -326,7 +326,7 @@ void processCombFasta(string[] ARG_G, string[] ARG_L, string DirConsensus) {
} }
} }
// write different files // write different files
foreach (gene; ARG_G) { foreach (gene; parallel(ARG_G,1)) {
string outputFile = DirConGene ~ "/" ~ gene ~ ".fasta"; string outputFile = DirConGene ~ "/" ~ gene ~ ".fasta";
File output = File(outputFile, "w"); File output = File(outputFile, "w");
if (gene in geneSequences) { if (gene in geneSequences) {