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kuoi 2024-07-05 15:20:25 +10:00
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README.md
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@ -65,6 +65,8 @@ for example: bash RGBEPP.sh -c scaffolds -f all -l list -g genes -r reference.aa
Each directory corresponds to each function. Each directory corresponds to each function.
`00_raw` should conatin all raw fastq.gz data.
## Text Files ## Text Files
`list` is the text file containing all samples, if your raw data is following the style ${list_name}\_R1.fastq.gz and ${list_name}\_R2.fastq.gz, ${list_name} is what you should list in `list` file. The easy way to get it in Linux/Unix system is the following command `list` is the text file containing all samples, if your raw data is following the style ${list_name}\_R1.fastq.gz and ${list_name}\_R2.fastq.gz, ${list_name} is what you should list in `list` file. The easy way to get it in Linux/Unix system is the following command