2024-12-08 14:18:57 +08:00
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fastp = /usr/bin/fastp
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spades = /usr/bin/spades.py
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diamond = /usr/bin/diamond
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sortdiamond = /usr/bin/sortdiamond
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bowtie2 = /usr/bin/bowtie2
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samtools = /usr/bin/samtools
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bcftools = /usr/bin/bcftools
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2024-12-09 12:23:55 +08:00
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exonerate = /usr/bin/exonerate
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2024-12-08 14:18:57 +08:00
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macse = /usr/share/java/macse.jar
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delstop = /usr/bin/delstop
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trimal = /usr/bin/trimal
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2024-12-09 13:51:23 +08:00
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raw_dir = 00_raw
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fastp_dir = 01_fastp
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spades_dir = 02_spades
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bowtie2_dir = 03_bowtie2
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bam_dir = 04_bam
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vcf_dir = 05_vcf
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consen_dir = 06_consen
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macse_dir = 07_macse
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trimal_dir = 08_trimal
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